Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04347 59 / 8e-12 Plant self-incompatibility protein S1 family (.1) AT5G04350 59 / 1e-11 Plant self-incompatibility protein S1 family (.1) AT4G16295 51 / 1e-08 SPH1 S-protein homologue 1 (.1) AT3G27680 50 / 2e-08 Plant self-incompatibility protein S1 family (.1) AT4G29035 50 / 3e-08 Plant self-incompatibility protein S1 family (.1) AT2G24870 47 / 3e-07 Plant self-incompatibility protein S1 family (.1) AT3G26880 46 / 6e-07 Plant self-incompatibility protein S1 family (.1) AT3G26870 45 / 2e-06 Plant self-incompatibility protein S1 family (.1) AT1G28305 44 / 6e-06 Plant self-incompatibility protein S1 family (.1) AT3G26860 43 / 1e-05 Plant self-incompatibility protein S1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029383 [exp] 109 / 4e-31 AT5G04350 63 / 6e-13 Plant self-incompatibility protein S1 family (.1) Lus10016171 [exp] 103 / 1e-28 AT5G04347 54 / 7e-10 Plant self-incompatibility protein S1 family (.1) Lus10016165 [exp] 94 / 6e-25 AT3G10460 52 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10029390 [exp] 94 / 6e-25 AT4G16295 71 / 5e-16 S-protein homologue 1 (.1) Lus10029376 [exp] 92 / 2e-24 AT5G38435 52 / 3e-09 S-protein homologue 8 (.1) Lus10029386 [exp] 89 / 3e-23 AT4G29035 53 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10029388 [exp] 88 / 6e-23 AT5G04350 55 / 3e-10 Plant self-incompatibility protein S1 family (.1) Lus10011892 [exp] 87 / 3e-22 AT4G16295 71 / 3e-16 S-protein homologue 1 (.1) Lus10029377 [exp] 84 / 2e-21 AT4G16295 57 / 8e-11 S-protein homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 102 / 3e-28 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.010G008300 [exp] 51 / 8e-09 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.003G175200 [exp] 48 / 2e-07 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1) Potri.003G175000 [exp] 47 / 4e-07 AT3G24060 46 / 7e-07 Plant self-incompatibility protein S1 family (.1) Potri.004G199801 [exp] 46 / 1e-06 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.001G053100 [exp] 43 / 1e-05 AT3G24060 171 / 2e-55 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 42 / 3e-05 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.001G053200 [exp] 38 / 0.0005 AT3G24060 56 / 1e-10 Plant self-incompatibility protein S1 family (.1) Potri.002G263900 [exp] 38 / 0.0006 AT3G24060 46 / 5e-07 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 38 / 0.0006 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10029375 pacid=23139858 polypeptide=Lus10029375 locus=Lus10029375.g ID=Lus10029375.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCCGCCGTGGCCGCGGCGGCGGTGGCAGCAATTCTACTGTCCGCAATTCTGCCGTCATCTGCCGGATTTGTACCGTACTACCATGTCCACA TCGTCAACAACCTGCGCGGCAAGGTGTTGCTGGTGCGTTGTCGCTCGAGCAACCGGGACCTGGGAGACCAGAACATCCAGGTTGGGTCCGAGTTCGAATG GAAGCTCCATCGGCAGGTATGGCGATCGACAAACTGGGTGTGTTACCTCGCTCCGGACTACTACCGCCATGCCTTCTTTCAAGCGTACACCGATTTCACT CCGGATTACAATCACAATGTCTATTGGGTTGCAAAAGAGGACGGGGTTTATGTTAGGGATGGTTCGGGGAAATATGCTGATGTCTTCAAATTCAGATGGG ACGCTGGCCGAAATCGTCTACATAAGAATACCAATAGTCGTTTATTTTCTTTCTTATGA
AA sequence Show only first row Show all	>Lus10029375 pacid=23139858 polypeptide=Lus10029375 locus=Lus10029375.g ID=Lus10029375.BGIv1.0 annot-version=v1.0 MAAAAVAAAAVAAILLSAILPSSAGFVPYYHVHIVNNLRGKVLLVRCRSSNRDLGDQNIQVGSEFEWKLHRQVWRSTNWVCYLAPDYYRHAFFQAYTDFT PDYNHNVYWVAKEDGVYVRDGSGKYADVFKFRWDAGRNRLHKNTNSRLFSFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04347			Plant self-incompatibility pro...		Lus10029375 [exp]	0	1
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10038956 [exp]	1.7	1.0000
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	3.5	1.0000
AT5G44950			F-box/RNI-like/FBD-like domain...		Lus10018863 [exp]	4.2	0.8221
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	4.2	1.0000
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	4.9	1.0000
					Lus10035508 [exp]	5.5	1.0000
					Lus10034814 [exp]	6.0	0.9390
					Lus10012269 [exp]	6.0	1.0000
AT4G16640			Matrixin family protein (.1)		Lus10037419 [exp]	6.3	0.9815
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028506 [exp]	6.6	0.6137

Compare expression of checked genes

Lus10029375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.