Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16295 54 / 1e-09 SPH1 S-protein homologue 1 (.1) AT4G29035 52 / 3e-09 Plant self-incompatibility protein S1 family (.1) AT5G04350 50 / 3e-08 Plant self-incompatibility protein S1 family (.1) AT5G04347 49 / 3e-08 Plant self-incompatibility protein S1 family (.1) AT3G10460 46 / 6e-07 Plant self-incompatibility protein S1 family (.1) AT5G04047 44 / 3e-06 Plant self-incompatibility protein S1 family (.1) AT4G10895 43 / 8e-06 Plant self-incompatibility protein S1 family (.1) AT1G11765 40 / 6e-05 Plant self-incompatibility protein S1 family (.1) AT1G28305 40 / 0.0001 Plant self-incompatibility protein S1 family (.1) AT3G27680 40 / 0.0001 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016168 [exp] 139 / 6e-43 AT5G38435 51 / 9e-09 S-protein homologue 8 (.1) Lus10029379 [exp] 135 / 1e-41 AT5G38435 47 / 2e-07 S-protein homologue 8 (.1) Lus10029376 [exp] 135 / 1e-41 AT5G38435 52 / 3e-09 S-protein homologue 8 (.1) Lus10029384 [exp] 130 / 1e-39 AT5G38435 51 / 1e-08 S-protein homologue 8 (.1) Lus10029385 [exp] 129 / 3e-39 AT5G38435 55 / 3e-10 S-protein homologue 8 (.1) Lus10029383 [exp] 127 / 3e-38 AT5G04350 63 / 6e-13 Plant self-incompatibility protein S1 family (.1) Lus10029378 [exp] 126 / 5e-38 AT5G04350 54 / 1e-09 Plant self-incompatibility protein S1 family (.1) Lus10016165 [exp] 124 / 2e-37 AT3G10460 52 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10029381 [exp] 116 / 4e-34 AT5G04350 54 / 1e-09 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 85 / 2e-21 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 56 / 1e-10 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.010G008300 [exp] 44 / 2e-06 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.004G199700 [exp] 44 / 4e-06 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.004G199801 [exp] 43 / 2e-05 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10029377 pacid=23139798 polypeptide=Lus10029377 locus=Lus10029377.g ID=Lus10029377.BGIv1.0 annot-version=v1.0 ATGGTATCCAACAAGATTCTCTCACTTGTCGTCGTGGTAGCAACACTTGTGCTAGCCACGATCCCGCCATCGTTGGCGGTTTGGTGGAGCCATCCACACT TCCATGTCCACGTCATAAACGAGCTCAGCCATGATGAGGTATTGACGGTGAAATGTCGTTGTACCGACGCACCTCAGCCAGACATGTACATCAACGTTGG GACTGAGTACTCGTGGCCGTTCAAGTTACATTGGTTCCGATACACAAAGTGGTGGTGTTACCTTTCCCCAGACAACAATCGTCATGTGGAGTTTGTATCC TTCAAGGAAGACATGAAAACTGACGAGGGTAATGTCTATTGGGCTGTTAAAGAAGACGGCGTTTACTGGAGGGCTTCTGGTTCGGATGACTTGAAATATC AATGGCAAACCGGTCTCTAG
AA sequence Show only first row Show all	>Lus10029377 pacid=23139798 polypeptide=Lus10029377 locus=Lus10029377.g ID=Lus10029377.BGIv1.0 annot-version=v1.0 MVSNKILSLVVVVATLVLATIPPSLAVWWSHPHFHVHVINELSHDEVLTVKCRCTDAPQPDMYINVGTEYSWPFKLHWFRYTKWWCYLSPDNNRHVEFVS FKEDMKTDEGNVYWAVKEDGVYWRASGSDDLKYQWQTGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	0	1
					Lus10038978 [exp]	1.7	0.9744
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026926 [exp]	2.2	0.9648
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	2.4	0.9779
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	3.5	0.9779
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	4.9	0.9673
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10012953 [exp]	5.1	0.9274
AT1G11410			S-locus lectin protein kinase ...		Lus10007608 [exp]	5.8	0.9153
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	6.0	0.9627
AT5G43190			Galactose oxidase/kelch repeat...		Lus10007740 [exp]	6.5	0.8862
					Lus10011637 [exp]	6.9	0.9577

Compare expression of checked genes

Lus10029377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.