Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38435 47 / 2e-07 SPH8 S-protein homologue 8 (.1) AT5G04350 46 / 8e-07 Plant self-incompatibility protein S1 family (.1) AT3G26870 42 / 1e-05 Plant self-incompatibility protein S1 family (.1) AT5G38440 42 / 2e-05 Plant self-incompatibility protein S1 family (.1) AT3G26860 40 / 6e-05 Plant self-incompatibility protein S1 family (.1.2) AT5G04347 39 / 0.0004 Plant self-incompatibility protein S1 family (.1) AT3G26880 38 / 0.0007 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029384 [exp] 221 / 3e-75 AT5G38435 51 / 1e-08 S-protein homologue 8 (.1) Lus10029385 [exp] 216 / 2e-73 AT5G38435 55 / 3e-10 S-protein homologue 8 (.1) Lus10029381 [exp] 213 / 4e-72 AT5G04350 54 / 1e-09 Plant self-incompatibility protein S1 family (.1) Lus10029378 [exp] 169 / 9e-55 AT5G04350 54 / 1e-09 Plant self-incompatibility protein S1 family (.1) Lus10029380 [exp] 152 / 4e-48 AT5G04350 54 / 5e-10 Plant self-incompatibility protein S1 family (.1) Lus10029376 [exp] 145 / 3e-45 AT5G38435 52 / 3e-09 S-protein homologue 8 (.1) Lus10016165 [exp] 142 / 4e-44 AT3G10460 52 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10029377 [exp] 135 / 1e-41 AT4G16295 57 / 8e-11 S-protein homologue 1 (.1) Lus10016168 [exp] 125 / 1e-37 AT5G38435 51 / 9e-09 S-protein homologue 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 52 / 4e-09 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 52 / 6e-09 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.003G175100 [exp] 39 / 0.0004 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10029379 pacid=23139917 polypeptide=Lus10029379 locus=Lus10029379.g ID=Lus10029379.BGIv1.0 annot-version=v1.0 ATGACATCCAAATTTCTCTTACTTGCCATCGTGGTAGCAACATTTTTGACGGCTACAGTAATTCCTCCGTCGTCGGCATCCCTTTTTCATCGGATAACCT ATCATGTCCAAATCATAAACGAGCTTAGCCGGAACGAGGTTTTGACGGTGGATTGCAACTGTGCCGACGCAGCTCGGCCAACCAGTTACGTCAAAGCTGG AACTTTGTACGAGTGGTGGTTCAAGGTACATATATTCCGATCCACACATTGGTCGTGCAACCTTTCTGATCCAGCCAACAATCGTCATGTGTGGTTTGTA GCCTTTCACAACTCCATACTAACTGATGGTGACAATGTTTATTGGGCTGTTAAAGAAGACGGCGTTTATTCAAGGATGACTGATGCGGCTGACGTCTTGA AATTTCAATGGCAAACTGGTCCCAACCGGTCAACATCTAATTTGTGA
AA sequence Show only first row Show all	>Lus10029379 pacid=23139917 polypeptide=Lus10029379 locus=Lus10029379.g ID=Lus10029379.BGIv1.0 annot-version=v1.0 MTSKFLLLAIVVATFLTATVIPPSSASLFHRITYHVQIINELSRNEVLTVDCNCADAARPTSYVKAGTLYEWWFKVHIFRSTHWSCNLSDPANNRHVWFV AFHNSILTDGDNVYWAVKEDGVYSRMTDAADVLKFQWQTGPNRSTSNL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029379 [exp]	0	1
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10025872 [exp]	1.0	0.9119
AT1G72125			Major facilitator superfamily ...		Lus10001288 [exp]	1.4	0.8577
AT4G16195			Plant self-incompatibility pro...		Lus10017929 [exp]	4.6	0.8377
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10016168 [exp]	5.3	0.8377
					Lus10034545 [exp]	5.9	0.8377
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	6.5	0.8377
AT5G67090			Subtilisin-like serine endopep...		Lus10002044 [exp]	7.0	0.8377
AT1G08790			Protein of unknown function (D...		Lus10042536 [exp]	7.9	0.7600
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10022732 [exp]	9.2	0.7286
AT2G46570		LAC6	laccase 6 (.1)		Lus10005976 [exp]	9.8	0.7857

Compare expression of checked genes

Lus10029379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.