Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04350 54 / 8e-10 Plant self-incompatibility protein S1 family (.1) AT5G38435 48 / 1e-07 SPH8 S-protein homologue 8 (.1) AT3G26880 47 / 2e-07 Plant self-incompatibility protein S1 family (.1) AT2G23148 42 / 2e-05 Plant self-incompatibility protein S1 family (.1) AT5G38440 42 / 2e-05 Plant self-incompatibility protein S1 family (.1) AT3G26860 40 / 6e-05 Plant self-incompatibility protein S1 family (.1.2) AT3G10460 37 / 0.0009 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029384 [exp] 215 / 6e-73 AT5G38435 51 / 1e-08 S-protein homologue 8 (.1) Lus10029379 [exp] 213 / 4e-72 AT5G38435 47 / 2e-07 S-protein homologue 8 (.1) Lus10029385 [exp] 203 / 3e-68 AT5G38435 55 / 3e-10 S-protein homologue 8 (.1) Lus10029378 [exp] 160 / 3e-51 AT5G04350 54 / 1e-09 Plant self-incompatibility protein S1 family (.1) Lus10029380 [exp] 156 / 8e-50 AT5G04350 54 / 5e-10 Plant self-incompatibility protein S1 family (.1) Lus10029376 [exp] 139 / 7e-43 AT5G38435 52 / 3e-09 S-protein homologue 8 (.1) Lus10016165 [exp] 133 / 1e-40 AT3G10460 52 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10016168 [exp] 122 / 2e-36 AT5G38435 51 / 9e-09 S-protein homologue 8 (.1) Lus10029377 [exp] 116 / 6e-34 AT4G16295 57 / 8e-11 S-protein homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252500 [exp] 51 / 2e-08 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.016G066900 [exp] 50 / 2e-08 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.006G170200 [exp] 43 / 2e-05 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10029381 pacid=23139905 polypeptide=Lus10029381 locus=Lus10029381.g ID=Lus10029381.BGIv1.0 annot-version=v1.0 ATGACATCTAAGATTCTCTTACTTGCTATCGCGGTAGCAACATTTTTGCTGGCCACAACGATTCCTCCGTCGTCGGGAGTCTGGTGGCATAAGACAAGCT ATCATGTCCACATAAAAAACGAGCTTAGCCGGAAAGAGATTTTGAGGGTGGATTGCAACTGTGCAGACGGAAGTCAGCCAACCAGTTACGTCAAACCTGG GACTGAGTACGAGTGGTGGTTCAAGGAGCATTTGTTCCGATCTACACATTGGTCGTGCAACGTTTATGATCGAGCCCACAATCGTCACGTGTGGTTTCTA GCCTTCTATGACTGGATACGAGCCGAATATAACAACGTCAATTGGGTTGTGAAAGAAGACGGTGTTTATTCAAGGATTAGTGATGCCCCTGACACCTTTG AATTTCAATGGAAAACCGGTCCAAAACCGTCTGCATCTTATTTGTGA
AA sequence Show only first row Show all	>Lus10029381 pacid=23139905 polypeptide=Lus10029381 locus=Lus10029381.g ID=Lus10029381.BGIv1.0 annot-version=v1.0 MTSKILLLAIAVATFLLATTIPPSSGVWWHKTSYHVHIKNELSRKEILRVDCNCADGSQPTSYVKPGTEYEWWFKEHLFRSTHWSCNVYDRAHNRHVWFL AFYDWIRAEYNNVNWVVKEDGVYSRISDAPDTFEFQWKTGPKPSASYL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04350			Plant self-incompatibility pro...		Lus10029381 [exp]	0	1
AT2G25270			unknown protein		Lus10014341 [exp]	4.5	0.8255
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	6.6	0.8034
					Lus10041324 [exp]	7.7	0.7448
					Lus10028048 [exp]	8.1	0.8034
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	9.4	0.8034
AT2G48020			Major facilitator superfamily ...		Lus10029629 [exp]	9.8	0.7186
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10017278 [exp]	10.4	0.7007
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10008888 [exp]	10.5	0.8034
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10014711 [exp]	10.7	0.7498
					Lus10009177 [exp]	11.5	0.8034

Compare expression of checked genes

Lus10029381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.