Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04350 61 / 2e-12 Plant self-incompatibility protein S1 family (.1) AT5G38435 49 / 4e-08 SPH8 S-protein homologue 8 (.1) AT1G28305 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) AT5G04347 47 / 4e-07 Plant self-incompatibility protein S1 family (.1) AT3G27680 47 / 4e-07 Plant self-incompatibility protein S1 family (.1) AT3G10460 47 / 5e-07 Plant self-incompatibility protein S1 family (.1) AT4G10895 46 / 7e-07 Plant self-incompatibility protein S1 family (.1) AT4G16295 45 / 2e-06 SPH1 S-protein homologue 1 (.1) AT4G29035 44 / 6e-06 Plant self-incompatibility protein S1 family (.1) AT3G26860 42 / 2e-05 Plant self-incompatibility protein S1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029376 [exp] 134 / 9e-41 AT5G38435 52 / 3e-09 S-protein homologue 8 (.1) Lus10029377 [exp] 124 / 5e-37 AT4G16295 57 / 8e-11 S-protein homologue 1 (.1) Lus10016165 [exp] 121 / 8e-36 AT3G10460 52 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10029378 [exp] 120 / 2e-35 AT5G04350 54 / 1e-09 Plant self-incompatibility protein S1 family (.1) Lus10029380 [exp] 118 / 1e-34 AT5G04350 54 / 5e-10 Plant self-incompatibility protein S1 family (.1) Lus10016171 [exp] 109 / 5e-31 AT5G04347 54 / 7e-10 Plant self-incompatibility protein S1 family (.1) Lus10029375 [exp] 109 / 6e-31 AT5G04347 62 / 4e-13 Plant self-incompatibility protein S1 family (.1) Lus10016168 [exp] 108 / 1e-30 AT5G38435 51 / 9e-09 S-protein homologue 8 (.1) Lus10029385 [exp] 107 / 3e-30 AT5G38435 55 / 3e-10 S-protein homologue 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 77 / 2e-18 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 56 / 3e-10 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.004G199700 [exp] 54 / 9e-10 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.004G199801 [exp] 52 / 6e-09 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.010G008300 [exp] 47 / 4e-07 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.001G053300 [exp] 43 / 8e-06 AT3G24060 82 / 2e-20 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10029383 pacid=23139954 polypeptide=Lus10029383 locus=Lus10029383.g ID=Lus10029383.BGIv1.0 annot-version=v1.0 ATGTTCTCTTCCTCCGACACCCGACCCAAGAGTCCCGCACGACCGATCACTATTGTCGTTGTCGCGGTAGCAACACTACTACTTGCGACGAGCCCTCCAG CATCGGCCTGGTCGCTATGGCATCCTCCACACTACCATGTCCACATCGTAAACGAGCTCAAGGGCCACAAGGTGTTGGTGGTGCAGTGTCGATGTACTGA CGCGCCTGAGCCAATCACTCTCGTCAAAGCTGGAAAAGAGTACGTCTTTTCGTTCAAGGAACATATTTTTCGAGACACGCTTTGGACATGCTACCTTTCT CCAGACAATCATCGCCATGTTAGTTTCGTAGCCTATGAGAACGAGACCCCAAGTTTGGAGCGAAATGTCGTTTGGGCTGTTAAAGAGGACGGGGTCTATT TTCGAGACGGTCGAAGGGGCTTTGGAGATTTGTTCTTATATAAATGGGAACATGGTCGCCTGCCTAATTAA
AA sequence Show only first row Show all	>Lus10029383 pacid=23139954 polypeptide=Lus10029383 locus=Lus10029383.g ID=Lus10029383.BGIv1.0 annot-version=v1.0 MFSSSDTRPKSPARPITIVVVAVATLLLATSPPASAWSLWHPPHYHVHIVNELKGHKVLVVQCRCTDAPEPITLVKAGKEYVFSFKEHIFRDTLWTCYLS PDNHRHVSFVAYENETPSLERNVVWAVKEDGVYFRDGRRGFGDLFLYKWEHGRLPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04350			Plant self-incompatibility pro...		Lus10029383 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	3.7	1.0000
					Lus10001326 [exp]	5.0	1.0000
					Lus10004351 [exp]	5.7	1.0000
					Lus10033811 [exp]	7.9	1.0000
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10008244 [exp]	8.4	1.0000
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	8.4	1.0000
					Lus10027374 [exp]	8.5	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	9.2	1.0000
AT3G57030			Calcium-dependent phosphotries...		Lus10009015 [exp]	9.2	1.0000
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10036445 [exp]	10.9	1.0000

Compare expression of checked genes

Lus10029383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.