Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38435 51 / 8e-09 SPH8 S-protein homologue 8 (.1) AT3G27331 41 / 4e-05 Plant self-incompatibility protein S1 family (.1) AT3G27329 41 / 4e-05 Plant self-incompatibility protein S1 family (.1) AT5G04350 40 / 0.0001 Plant self-incompatibility protein S1 family (.1) AT3G26880 39 / 0.0004 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029385 [exp] 231 / 2e-79 AT5G38435 55 / 3e-10 S-protein homologue 8 (.1) Lus10029379 [exp] 220 / 5e-75 AT5G38435 47 / 2e-07 S-protein homologue 8 (.1) Lus10029381 [exp] 215 / 5e-73 AT5G04350 54 / 1e-09 Plant self-incompatibility protein S1 family (.1) Lus10029376 [exp] 159 / 5e-51 AT5G38435 52 / 3e-09 S-protein homologue 8 (.1) Lus10029378 [exp] 159 / 1e-50 AT5G04350 54 / 1e-09 Plant self-incompatibility protein S1 family (.1) Lus10029380 [exp] 155 / 2e-49 AT5G04350 54 / 5e-10 Plant self-incompatibility protein S1 family (.1) Lus10016165 [exp] 139 / 3e-43 AT3G10460 52 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10029377 [exp] 130 / 9e-40 AT4G16295 57 / 8e-11 S-protein homologue 1 (.1) Lus10016168 [exp] 127 / 5e-38 AT5G38435 51 / 9e-09 S-protein homologue 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 55 / 7e-10 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 48 / 2e-07 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.006G170200 [exp] 46 / 1e-06 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.004G199700 [exp] 43 / 1e-05 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.003G201300 [exp] 41 / 5e-05 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10029384 pacid=23139913 polypeptide=Lus10029384 locus=Lus10029384.g ID=Lus10029384.BGIv1.0 annot-version=v1.0 ATGACATCAAAGATTTTCTCACTTGCCATCGTGGTAGCAACACTTTTGCTGGCCTCGACGATTCCTCCATCGTCGGCGACATGGTTTCACAGGGAAAGCT ATCATGTCCACATCATAAATGAGCTTAGCCGGAACGAGGTTTTGACGGTGGATTGCAACTGCGCAGACGGAGCTCAGCCAACCGGTTACGTCAAAGTTGG AACTGAGTACGAGTGGTGGTTCAAGGAGCACGCGTTCCGATCCACACATTGGTCGTGCAACCTTTTTGATCCGGCCAACAATCGTCACGTGTGGTTCGTA GCCTTTTATGACGGCATGATAAGTGCAGGTAACGACGTCTATTGGGCGGTTAAAGAAAACGGAGTTTACTCAAGGTATGAGAACGACGAGTTGGAATCTC AATGGAAAACCGGTCCCAAACGGTCTGCAATCAGAGTTCTGATTTGA
AA sequence Show only first row Show all	>Lus10029384 pacid=23139913 polypeptide=Lus10029384 locus=Lus10029384.g ID=Lus10029384.BGIv1.0 annot-version=v1.0 MTSKIFSLAIVVATLLLASTIPPSSATWFHRESYHVHIINELSRNEVLTVDCNCADGAQPTGYVKVGTEYEWWFKEHAFRSTHWSCNLFDPANNRHVWFV AFYDGMISAGNDVYWAVKENGVYSRYENDELESQWKTGPKRSAIRVLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029384 [exp]	0	1
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	2.8	1.0000
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	4.0	1.0000
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10008888 [exp]	5.2	1.0000
					Lus10009177 [exp]	6.0	1.0000
					Lus10035026 [exp]	6.7	1.0000
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10011252 [exp]	7.7	1.0000
					Lus10026785 [exp]	8.4	1.0000
					Lus10028048 [exp]	8.9	1.0000
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10000008 [exp]	9.5	1.0000
					Lus10001123 [exp]	10.0	1.0000

Compare expression of checked genes

Lus10029384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.