Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38435 52 / 4e-09 SPH8 S-protein homologue 8 (.1) AT5G04350 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) AT5G38440 44 / 2e-06 Plant self-incompatibility protein S1 family (.1) AT2G23148 39 / 0.0002 Plant self-incompatibility protein S1 family (.1) AT3G26880 38 / 0.0005 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029384 [exp] 210 / 6e-71 AT5G38435 51 / 1e-08 S-protein homologue 8 (.1) Lus10029379 [exp] 196 / 2e-65 AT5G38435 47 / 2e-07 S-protein homologue 8 (.1) Lus10029381 [exp] 177 / 4e-58 AT5G04350 54 / 1e-09 Plant self-incompatibility protein S1 family (.1) Lus10029378 [exp] 139 / 4e-43 AT5G04350 54 / 1e-09 Plant self-incompatibility protein S1 family (.1) Lus10029376 [exp] 133 / 8e-41 AT5G38435 52 / 3e-09 S-protein homologue 8 (.1) Lus10029380 [exp] 131 / 4e-40 AT5G04350 54 / 5e-10 Plant self-incompatibility protein S1 family (.1) Lus10016168 [exp] 131 / 6e-40 AT5G38435 51 / 9e-09 S-protein homologue 8 (.1) Lus10029377 [exp] 126 / 5e-38 AT4G16295 57 / 8e-11 S-protein homologue 1 (.1) Lus10016165 [exp] 122 / 1e-36 AT3G10460 52 / 2e-09 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 53 / 3e-09 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 42 / 2e-05 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.006G170200 [exp] 41 / 5e-05 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.004G199700 [exp] 39 / 0.0004 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10029385 pacid=23139778 polypeptide=Lus10029385 locus=Lus10029385.g ID=Lus10029385.BGIv1.0 annot-version=v1.0 ATGACATCCAAAAATCTCTTACTTGCCATCGCGGTAGCAACACTTTTGCTGGCCTCAACAATTCCTCCATCGTCGGCAGCATGGTTTCATAGGGAAAGCT ATCATGTCCACATAAAAAACGAGCTTAGCCGGAATGAGGTTCTGAAGGTGGATTGCAATTGCGCAGACAGAGCTCAGCCAACCGGTTATGTCAAAGTTGG AAATGAGTACGAGTGGTGGTTCAAGGAGCACGCGTTCCGATCCACACATTGGTCGTGCAACCTTTCTGATCCAGCCAACAATCGTCACGTGTGGTTCGTA GCCTATGATGACAACATGGAAACTGCAGGGCAAGACGTTTATTGGGCTGTTAAAAACGACGGAGTTTACTCAAGGCTTCCTTTTCAGGCCGACAACTTGC AATTTAAATGGCAAAACGGTCGCAACTAG
AA sequence Show only first row Show all	>Lus10029385 pacid=23139778 polypeptide=Lus10029385 locus=Lus10029385.g ID=Lus10029385.BGIv1.0 annot-version=v1.0 MTSKNLLLAIAVATLLLASTIPPSSAAWFHRESYHVHIKNELSRNEVLKVDCNCADRAQPTGYVKVGNEYEWWFKEHAFRSTHWSCNLSDPANNRHVWFV AYDDNMETAGQDVYWAVKNDGVYSRLPFQADNLQFKWQNGRN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029385 [exp]	0	1
AT1G55230			Family of unknown function (DU...		Lus10039191 [exp]	1.0	0.9389
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10023901 [exp]	2.2	0.9025
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	3.0	0.9113
AT3G58880			F-box/RNI-like superfamily pro...		Lus10035669 [exp]	3.7	0.9299
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10020713 [exp]	5.3	0.9099
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	8.8	0.9010
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10018785 [exp]	8.9	0.8564
					Lus10038978 [exp]	10.2	0.8935
AT3G06830			Plant invertase/pectin methyle...		Lus10000034 [exp]	11.4	0.7964
AT3G53270			Small nuclear RNA activating c...		Lus10001478 [exp]	16.5	0.8389

Compare expression of checked genes

Lus10029385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.