Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29035 53 / 2e-09 Plant self-incompatibility protein S1 family (.1) AT5G04347 50 / 1e-08 Plant self-incompatibility protein S1 family (.1) AT4G16295 47 / 4e-07 SPH1 S-protein homologue 1 (.1) AT1G28305 46 / 6e-07 Plant self-incompatibility protein S1 family (.1) AT5G04350 46 / 6e-07 Plant self-incompatibility protein S1 family (.1) AT1G11765 44 / 5e-06 Plant self-incompatibility protein S1 family (.1) AT3G26880 44 / 6e-06 Plant self-incompatibility protein S1 family (.1) AT3G26870 42 / 2e-05 Plant self-incompatibility protein S1 family (.1) AT5G39493 39 / 0.0002 Plant self-incompatibility protein S1 family (.1) AT3G26860 39 / 0.0003 Plant self-incompatibility protein S1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029389 [exp] 167 / 7e-54 AT2G06090 40 / 2e-04 Plant self-incompatibility protein S1 family (.1) Lus10029387 [exp] 150 / 2e-47 AT5G04350 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Lus10029388 [exp] 128 / 1e-38 AT5G04350 55 / 3e-10 Plant self-incompatibility protein S1 family (.1) Lus10029390 [exp] 116 / 7e-34 AT4G16295 71 / 5e-16 S-protein homologue 1 (.1) Lus10016171 [exp] 100 / 1e-27 AT5G04347 54 / 7e-10 Plant self-incompatibility protein S1 family (.1) Lus10029375 [exp] 89 / 3e-23 AT5G04347 62 / 4e-13 Plant self-incompatibility protein S1 family (.1) Lus10016165 [exp] 88 / 6e-23 AT3G10460 52 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10029383 [exp] 86 / 8e-22 AT5G04350 63 / 6e-13 Plant self-incompatibility protein S1 family (.1) Lus10029377 [exp] 82 / 2e-20 AT4G16295 57 / 8e-11 S-protein homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 67 / 8e-15 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 54 / 8e-10 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.004G199801 [exp] 51 / 2e-08 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.004G199700 [exp] 45 / 2e-06 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.010G008300 [exp] 44 / 4e-06 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.018G148630 [exp] 40 / 0.0001 AT1G04645 106 / 3e-30 Plant self-incompatibility protein S1 family (.1) Potri.006G170200 [exp] 39 / 0.0003 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.018G148366 [exp] 39 / 0.0003 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10029386 pacid=23139890 polypeptide=Lus10029386 locus=Lus10029386.g ID=Lus10029386.BGIv1.0 annot-version=v1.0 ATGCTCCTCTCCTCCTCGTCCAAGCCTCTATTGGTCCTGATGCTAGCGATGCCGGTTCTTCTAGCAACGCTTAGTTCGTCGGCAAGTGTACAATACGGCC CAACCATTGCCGCTCACGTAAAAAATGAGCTCAATCCGGGTAAGGTGTTGTACGTGCGTTGTCATTGCAACGACCATGATTTGGGAGATCAGTACATCAA CGTCGGGGCCGAGTTCACTTGGACGTTCCACCCACATTTCATCAAGAAGAATCTCTGGCAGTGCTACATCGCTCCGGACAGCAACCACCACGCTTATTTC CATGTGTACGATAACAAATCTCCGAGCTACGATTTCGATTTTGTTTTCGCGGCTAAAGAGGACGGGGTCTATTATAGGAACCAAGACAGTCACGAAGATG AATTCTTCTCCAATTATCTGCCTGGCAAGCTGATTCATTGA
AA sequence Show only first row Show all	>Lus10029386 pacid=23139890 polypeptide=Lus10029386 locus=Lus10029386.g ID=Lus10029386.BGIv1.0 annot-version=v1.0 MLLSSSSKPLLVLMLAMPVLLATLSSSASVQYGPTIAAHVKNELNPGKVLYVRCHCNDHDLGDQYINVGAEFTWTFHPHFIKKNLWQCYIAPDSNHHAYF HVYDNKSPSYDFDFVFAAKEDGVYYRNQDSHEDEFFSNYLPGKLIH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29035			Plant self-incompatibility pro...		Lus10029386 [exp]	0	1

Compare expression of checked genes

Lus10029386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.