Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29035 53 / 2e-09 Plant self-incompatibility protein S1 family (.1) AT5G04350 50 / 2e-08 Plant self-incompatibility protein S1 family (.1) AT5G04347 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) AT4G16295 48 / 1e-07 SPH1 S-protein homologue 1 (.1) AT3G10460 45 / 8e-07 Plant self-incompatibility protein S1 family (.1) AT2G24870 45 / 1e-06 Plant self-incompatibility protein S1 family (.1) AT3G26880 44 / 2e-06 Plant self-incompatibility protein S1 family (.1) AT1G09245 43 / 1e-05 Plant self-incompatibility protein S1 family (.1) AT3G55677 42 / 2e-05 Plant self-incompatibility protein S1 family (.1) AT3G55252 41 / 6e-05 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029386 [exp] 133 / 8e-41 AT4G29035 53 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10029389 [exp] 129 / 3e-39 AT2G06090 40 / 2e-04 Plant self-incompatibility protein S1 family (.1) Lus10029387 [exp] 118 / 1e-34 AT5G04350 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Lus10016165 [exp] 110 / 6e-32 AT3G10460 52 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10029390 [exp] 106 / 4e-30 AT4G16295 71 / 5e-16 S-protein homologue 1 (.1) Lus10016171 [exp] 102 / 1e-28 AT5G04347 54 / 7e-10 Plant self-incompatibility protein S1 family (.1) Lus10029383 [exp] 98 / 9e-27 AT5G04350 63 / 6e-13 Plant self-incompatibility protein S1 family (.1) Lus10016168 [exp] 96 / 4e-26 AT5G38435 51 / 9e-09 S-protein homologue 8 (.1) Lus10029377 [exp] 96 / 5e-26 AT4G16295 57 / 8e-11 S-protein homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 81 / 4e-20 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.010G008300 [exp] 54 / 6e-10 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.004G199801 [exp] 52 / 4e-09 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.002G252500 [exp] 47 / 3e-07 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.003G175000 [exp] 47 / 3e-07 AT3G24060 46 / 7e-07 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 45 / 2e-06 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.004G199700 [exp] 44 / 4e-06 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.018G148366 [exp] 43 / 5e-06 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1) Potri.018G148630 [exp] 40 / 9e-05 AT1G04645 106 / 3e-30 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10029388 pacid=23139777 polypeptide=Lus10029388 locus=Lus10029388.g ID=Lus10029388.BGIv1.0 annot-version=v1.0 ATGACAGGATCGCTCTTTGTGCTGATGCTAGTGGTGCCAATGCTGTTGGCCACGGTAAGTTCGTGGCCGGTAGTAAATGGCAACGGTGACATCGATATGC ACGTAAGAAACGAGCTTGATGCAGGGCGGGTGTTAAACGTGCATTGTCATTGCACGGACCACGATCTGGGGAACACCAAGATCAAAGTTGGGGCCGAGTA CTATTGGAGGTTCAAAACGCATTTCATCAGAAAGAACCTCTGGCAGTGTTACCTTGTTCCGGACACTCATCGCTACGCGTATTTTCACGTCTTCGATGAG GATACTCCAGGTGATGAAGAGAATATTTTTTGGGTTGCTAAGGAGGACGGGATCTATTATAGGTACCCGGACACTTCGAAAGACGAGTTCAGATACAAAT GGGACTCGAAAGTGTAG
AA sequence Show only first row Show all	>Lus10029388 pacid=23139777 polypeptide=Lus10029388 locus=Lus10029388.g ID=Lus10029388.BGIv1.0 annot-version=v1.0 MTGSLFVLMLVVPMLLATVSSWPVVNGNGDIDMHVRNELDAGRVLNVHCHCTDHDLGNTKIKVGAEYYWRFKTHFIRKNLWQCYLVPDTHRYAYFHVFDE DTPGDEENIFWVAKEDGIYYRYPDTSKDEFRYKWDSKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04350			Plant self-incompatibility pro...		Lus10029388 [exp]	0	1
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	2.6	1.0000
					Lus10011962 [exp]	3.7	1.0000
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	4.6	1.0000
					Lus10022805 [exp]	5.3	1.0000
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029332 [exp]	5.8	0.8653
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	5.9	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	6.5	1.0000
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	7.0	1.0000
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030911 [exp]	7.9	1.0000
					Lus10030558 [exp]	8.0	1.0000

Compare expression of checked genes

Lus10029388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.