Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17080 40 / 0.0001 Plant self-incompatibility protein S1 family (.1) AT4G29035 40 / 0.0002 Plant self-incompatibility protein S1 family (.1) AT3G26880 39 / 0.0003 Plant self-incompatibility protein S1 family (.1) AT2G06090 39 / 0.0004 Plant self-incompatibility protein S1 family (.1) AT4G16295 38 / 0.0006 SPH1 S-protein homologue 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029386 [exp] 179 / 8e-59 AT4G29035 53 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10029387 [exp] 169 / 6e-55 AT5G04350 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Lus10029388 [exp] 137 / 4e-42 AT5G04350 55 / 3e-10 Plant self-incompatibility protein S1 family (.1) Lus10029390 [exp] 110 / 1e-31 AT4G16295 71 / 5e-16 S-protein homologue 1 (.1) Lus10029383 [exp] 103 / 2e-28 AT5G04350 63 / 6e-13 Plant self-incompatibility protein S1 family (.1) Lus10029376 [exp] 99 / 4e-27 AT5G38435 52 / 3e-09 S-protein homologue 8 (.1) Lus10016171 [exp] 99 / 6e-27 AT5G04347 54 / 7e-10 Plant self-incompatibility protein S1 family (.1) Lus10029380 [exp] 93 / 1e-24 AT5G04350 54 / 5e-10 Plant self-incompatibility protein S1 family (.1) Lus10016165 [exp] 93 / 1e-24 AT3G10460 52 / 2e-09 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 82 / 3e-20 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.004G199801 [exp] 59 / 2e-11 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.010G008300 [exp] 49 / 4e-08 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 47 / 6e-07 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.004G199700 [exp] 42 / 3e-05 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.006G170200 [exp] 40 / 9e-05 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10029389 pacid=23139922 polypeptide=Lus10029389 locus=Lus10029389.g ID=Lus10029389.BGIv1.0 annot-version=v1.0 ATGACAATAATGTCCTTCTCCTCCTCCAAATCTCTTTTGGGGCAGCTAGCGGCGGCAACAATGGTCCTAGCCACGGTTGGTTCGTTGTCGGCACTACATT TCGGGCCCCACATTACGGCACACATACGAAACGAGCTCAGTCCGGGCAAGGTGTTGTACGTGCATTGTCACTGCACACACGGCGAGCAGGAAGGCCAGTA CATCAATGTCGGGGCCGAGTACAGTTGGAAATTCTACAAACATATCTTTGGAAAGAATCTCTGGCAGTGCTACCTCGCTCCGGACAACAACAACCATGCA TATTTCCATGTCTATGACAAGAAGACTCCGGGATTCGATTTCGATCTTATTTTCGTGGCTAAAGACGACGGGGTCTATTATAGGAACCAAGACACTCACT TTGATGAGTTCAACTGCGCATGGCAGCCTAACCAGCTGATCCATTGA
AA sequence Show only first row Show all	>Lus10029389 pacid=23139922 polypeptide=Lus10029389 locus=Lus10029389.g ID=Lus10029389.BGIv1.0 annot-version=v1.0 MTIMSFSSSKSLLGQLAAATMVLATVGSLSALHFGPHITAHIRNELSPGKVLYVHCHCTHGEQEGQYINVGAEYSWKFYKHIFGKNLWQCYLAPDNNNHA YFHVYDKKTPGFDFDLIFVAKDDGVYYRNQDTHFDEFNCAWQPNQLIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06090			Plant self-incompatibility pro...		Lus10029389 [exp]	0	1
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10025149 [exp]	1.0	1.0000
AT3G03470		CYP89A9	"cytochrome P450, family 87, s...		Lus10020361 [exp]	2.0	0.9347
AT2G40170		GEA6, ATEM6	LATE EMBRYOGENESIS ABUNDANT 6,...		Lus10030394 [exp]	2.8	0.8673
AT4G20820			FAD-binding Berberine family p...		Lus10023376 [exp]	9.0	0.8798
AT1G60830			RNA-binding (RRM/RBD/RNP motif...		Lus10011201 [exp]	12.0	0.7576
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024050 [exp]	12.8	0.8470
AT5G62840			Phosphoglycerate mutase family...		Lus10030165 [exp]	16.0	0.7499
					Lus10033534 [exp]	17.8	0.7685
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	19.3	0.7685
					Lus10039990 [exp]	20.6	0.7685

Compare expression of checked genes

Lus10029389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.