Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16295 71 / 5e-16 SPH1 S-protein homologue 1 (.1) AT4G29035 66 / 2e-14 Plant self-incompatibility protein S1 family (.1) AT5G04347 55 / 4e-10 Plant self-incompatibility protein S1 family (.1) AT5G04350 49 / 7e-08 Plant self-incompatibility protein S1 family (.1) AT4G16195 47 / 4e-07 Plant self-incompatibility protein S1 family (.1) AT3G26880 47 / 4e-07 Plant self-incompatibility protein S1 family (.1) AT5G38435 46 / 5e-07 SPH8 S-protein homologue 8 (.1) AT3G10460 46 / 7e-07 Plant self-incompatibility protein S1 family (.1) AT1G11765 45 / 1e-06 Plant self-incompatibility protein S1 family (.1) AT5G04047 44 / 4e-06 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016171 [exp] 121 / 9e-36 AT5G04347 54 / 7e-10 Plant self-incompatibility protein S1 family (.1) Lus10029385 [exp] 120 / 2e-35 AT5G38435 55 / 3e-10 S-protein homologue 8 (.1) Lus10029386 [exp] 120 / 3e-35 AT4G29035 53 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10029383 [exp] 119 / 6e-35 AT5G04350 63 / 6e-13 Plant self-incompatibility protein S1 family (.1) Lus10029384 [exp] 114 / 7e-33 AT5G38435 51 / 1e-08 S-protein homologue 8 (.1) Lus10029387 [exp] 112 / 2e-32 AT5G04350 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Lus10029376 [exp] 111 / 7e-32 AT5G38435 52 / 3e-09 S-protein homologue 8 (.1) Lus10029389 [exp] 110 / 1e-31 AT2G06090 40 / 2e-04 Plant self-incompatibility protein S1 family (.1) Lus10029380 [exp] 110 / 1e-31 AT5G04350 54 / 5e-10 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 100 / 4e-27 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 69 / 3e-15 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.004G199801 [exp] 62 / 2e-12 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.004G199700 [exp] 59 / 9e-12 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.003G201300 [exp] 53 / 2e-09 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.010G008300 [exp] 51 / 1e-08 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.006G170200 [exp] 48 / 3e-07 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.003G175200 [exp] 46 / 8e-07 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1) Potri.001G053100 [exp] 42 / 3e-05 AT3G24060 171 / 2e-55 Plant self-incompatibility protein S1 family (.1) Potri.001G053300 [exp] 40 / 8e-05 AT3G24060 82 / 2e-20 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10029390 pacid=23139875 polypeptide=Lus10029390 locus=Lus10029390.g ID=Lus10029390.BGIv1.0 annot-version=v1.0 ATGTACTCCCAGCCTACCATCGCAATTGCGGTGGCAGTTGTACTAATGGGAACAATCCCTCCATCGTCGGCGGCGATCTTTCCCTTCATTCACTACCATG GACACATCGTGAACGAGCTGAGCGCAAACAAGGTGTTGTTGGTGGACTGCCAGTGCAGCGACCACGATCTGGGAGACAATTATGTCAAAGTTGGAGGCGA GTTCCGGTGGTCGTTCAAGCCACATTTATTTAGGCAGACACTATGGCACTGTTACCTCGATCCAGACCGTAATAGTCACGCCTATATTGTAGCCTATGTT GATGACATGAAGAATGTTGATAAGCACCGCAATTTTATTTGGGTTGCGAAAGATGACGGGGTTTATGCGAGGAACCCTGAGTCCCATGAAGATTACTTCT CTTATGCATGGAAACCTGGCCACCTACACCTTGCCCGACGTTACATCTCTGATTGA
AA sequence Show only first row Show all	>Lus10029390 pacid=23139875 polypeptide=Lus10029390 locus=Lus10029390.g ID=Lus10029390.BGIv1.0 annot-version=v1.0 MYSQPTIAIAVAVVLMGTIPPSSAAIFPFIHYHGHIVNELSANKVLLVDCQCSDHDLGDNYVKVGGEFRWSFKPHLFRQTLWHCYLDPDRNSHAYIVAYV DDMKNVDKHRNFIWVAKDDGVYARNPESHEDYFSYAWKPGHLHLARRYISD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	0	1
					Lus10000400 [exp]	1.0	1.0000
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	2.0	1.0000
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	2.4	1.0000
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	3.0	0.9620
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	3.5	1.0000
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	3.7	0.9926
AT5G47550			Cystatin/monellin superfamily ...		Lus10034773 [exp]	3.9	0.9115
					Lus10009372 [exp]	3.9	1.0000
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	4.2	1.0000
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	4.5	0.9397

Compare expression of checked genes

Lus10029390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.