Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029390 [exp] 62 / 1e-12 AT4G16295 71 / 5e-16 S-protein homologue 1 (.1) Lus10029375 [exp] 62 / 2e-12 AT5G04347 62 / 4e-13 Plant self-incompatibility protein S1 family (.1) Lus10029377 [exp] 55 / 6e-10 AT4G16295 57 / 8e-11 S-protein homologue 1 (.1) Lus10016165 [exp] 48 / 1e-07 AT3G10460 52 / 2e-09 Plant self-incompatibility protein S1 family (.1) Lus10016171 [exp] 48 / 2e-07 AT5G04347 54 / 7e-10 Plant self-incompatibility protein S1 family (.1) Lus10011895 [exp] 48 / 3e-07 AT4G29035 72 / 3e-16 Plant self-incompatibility protein S1 family (.1) Lus10029388 [exp] 46 / 1e-06 AT5G04350 55 / 3e-10 Plant self-incompatibility protein S1 family (.1) Lus10016167 [exp] 45 / 1e-06 ND 37 / 6e-04 Lus10016168 [exp] 45 / 2e-06 AT5G38435 51 / 9e-09 S-protein homologue 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 53 / 4e-09 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10029391 pacid=23139962 polypeptide=Lus10029391 locus=Lus10029391.g ID=Lus10029391.BGIv1.0 annot-version=v1.0 ATGTTCTCTTCGTCCATCTCCCAGTTTAGAGCTCTCGTCGCAGTCATCGTAGCTGTGACAGTACTACTACTGTCGGCGGTCCCGCCATCCTCGTCAGCAA AACCCGTTCCCTCGAATACCTACACTGCCCATGTCGTGAACCATGGCGCGAACAAGGTGATTCTGGTCCGATGCAACTCTAACCAAGGCAGCCAGGTGGA GGAGTCCGTGAACGTCGACCTAGAGCTTGCGTGGTCGTTCAAGGCGGACGAGAACACGTCCTGGAGGTGTTACGTCGCCACCACTAATAAGCACAAGGAT TTCGTTATCTTCGGTCCTGGTCGGGACTGGACTCCGGTCCTCGATAGGCAGCACAACTTCTACTGGCTGGCGGAATCCAACGGCATCTTTTTGAAGAACC CTGTGAGCGGATCGGAATCGTTGGCTTATCGGTGGGATCAGGGTGGTGTCGCTGAGCTAGCCTGA
AA sequence Show only first row Show all	>Lus10029391 pacid=23139962 polypeptide=Lus10029391 locus=Lus10029391.g ID=Lus10029391.BGIv1.0 annot-version=v1.0 MFSSSISQFRALVAVIVAVTVLLLSAVPPSSSAKPVPSNTYTAHVVNHGANKVILVRCNSNQGSQVEESVNVDLELAWSFKADENTSWRCYVATTNKHKD FVIFGPGRDWTPVLDRQHNFYWLAESNGIFLKNPVSGSESLAYRWDQGGVAELA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029391 [exp]	0	1
AT3G05610			Plant invertase/pectin methyle...		Lus10015211 [exp]	4.6	0.9652
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	6.9	0.9603
AT1G04670			unknown protein		Lus10004041 [exp]	8.5	0.9603
					Lus10040397 [exp]	9.8	0.9603
					Lus10006918 [exp]	11.0	0.9603
					Lus10007508 [exp]	12.0	0.9603
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	13.0	0.9603
					Lus10027066 [exp]	13.9	0.9603
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009516 [exp]	14.7	0.9603
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	15.5	0.9603

Compare expression of checked genes

Lus10029391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.