Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52450 456 / 4e-159 PUB22 plant U-box 22 (.1) AT2G35930 438 / 2e-152 PUB23 plant U-box 23 (.1) AT3G11840 236 / 6e-73 PUB24 plant U-box 24 (.1) AT3G19380 178 / 2e-51 PUB25 plant U-box 25 (.1) AT5G37490 165 / 2e-46 ARM repeat superfamily protein (.1) AT1G66160 159 / 3e-44 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT1G49780 155 / 9e-43 PUB26 plant U-box 26 (.1) AT1G23030 123 / 3e-30 PUB11 ARM repeat superfamily protein (.1) AT5G09800 120 / 7e-30 ARM repeat superfamily protein (.1) AT3G46510 115 / 1e-27 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016166 [exp] 780 / 0 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10013584 [exp] 581 / 0 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10021267 [exp] 577 / 0 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10004191 [exp] 282 / 3e-89 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10029395 [exp] 263 / 2e-83 AT3G11840 296 / 8e-96 plant U-box 24 (.1) Lus10004095 [exp] 247 / 3e-80 AT2G35930 228 / 3e-73 plant U-box 23 (.1) Lus10000800 [exp] 243 / 5e-76 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10013352 [exp] 235 / 3e-75 AT2G35930 212 / 6e-67 plant U-box 23 (.1) Lus10008368 [exp] 237 / 1e-73 AT3G11840 284 / 2e-91 plant U-box 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G069400 [exp] 525 / 0 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.006G202600 [exp] 516 / 0 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 480 / 4e-169 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.001G216100 [exp] 455 / 3e-159 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.009G016100 [exp] 317 / 8e-105 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.006G202700 [exp] 314 / 8e-104 AT3G11840 362 / 3e-122 plant U-box 24 (.1) Potri.016G069500 [exp] 307 / 4e-101 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.001G216300 [exp] 290 / 3e-94 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.002G174500 [exp] 270 / 2e-86 AT2G35930 249 / 9e-79 plant U-box 23 (.1) Potri.014G101100 [exp] 256 / 3e-81 AT2G35930 266 / 3e-85 plant U-box 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10029393 pacid=23139987 polypeptide=Lus10029393 locus=Lus10029393.g ID=Lus10029393.BGIv1.0 annot-version=v1.0 ATGGACACAGAGATCGACATCCCAACCTACTTCCTCTGCCCCATTTCGCTGCAAATGATGAAGGATCCGGTCACCGTCCCCACCGGAATCACCTATGACC GCGACAGCATCGAGCGGTGGCTCTTCTCGGGGAAGAACACCACGTGTCCGGTCACCAAACAGGTAATCGTCGCATCCACGGACGAAAACTCCTCCGATCT TATGACGCCCAACATCATCCTCCGTCGGCTCATCCAGTCGTGGTGCACGGTCAATGCTTCTTGTGGCGTTGACCGCATTCCGACTCCTAAAGCACCGGTC AGCCGGTCCCAAGTCGCCAAGCTGTTAAGCTCCCCGGCTGGGCCGATGCAGAAGATCAAGTGCCTCAAGAAGTTGAAGTCCTTGGCGAAAGAGAACGACG CCAACCGGCGGTGCATAGAGTCAACTGCCGGAGCTGTTGACTTTTTAGCATCTGTCGTGGTCGAAGAGTTTGAGCACGAGGCAGGCGAGGAGGATGTGGT GGGGGTGAGTTTTGTTGATGACCAGTTCAGCGTTAGTGCGTCTGACGAGGCGCTGAGCCTTCTGCACCGGCTCCAGATCTCGGAGTCCGGGCTGAAGACT CTAGTCAACAAGAACCACAAATTTGTCGACTCGTTGGCGCGTGTGATGCGGAGCGGGAACTACGAGTCCCGCACGTATGCGGTCTCGCTGGCGAAGTCGA TGTTCGGAGTGGCGGATCCTTTACGGATCATTGGGGTGAGGAGTGAGTTTTTCGGTGAGATCGTTCAGGTGATTAGGGATCAAGTCTCCAGACAGGCAAC CAAGGCGGCATTGTCTCTCCTCATCGAGCTGTGCCCCTGGGGAAGGAACCGGATCAAGGCGGTCCACGGCGGTCTGGTTCCTGCCCTTGTCGATCTCCTT CTCGATTCGAACGACAGGCGGCCCTGCGAGATGGCCATGGCCGTCCTCGACTTGGTGTGCCAGTGCGCGGACGGCAGGGCAGAGTTGGTAAAACACGCAG CGGGGCTCGCAGTAGTGTCGAAGAAGATGCTTCGGGTTTCGAGCGTGGTGACTGAGAAGGCGGTGAGGGTTTTGCTATCGGTCGGGAAGTCTTCGGCGAG TAGCATTGTTCTTCAGGAGATGCTGCAGATTGGAGTGGTGGCTAAGCTGTGTTTGGTGTTGCAAGTGGAGAGTAGCCATAAGGCTAAGGATAAGGCGACG GAGTTGCTGAGGTTGCATGCTAGGGTTTGGAAGAACTCGCCATGCATGCCTCCGAGTTTGCTCTATTCTTATCCGGCTTGA
AA sequence Show only first row Show all	>Lus10029393 pacid=23139987 polypeptide=Lus10029393 locus=Lus10029393.g ID=Lus10029393.BGIv1.0 annot-version=v1.0 MDTEIDIPTYFLCPISLQMMKDPVTVPTGITYDRDSIERWLFSGKNTTCPVTKQVIVASTDENSSDLMTPNIILRRLIQSWCTVNASCGVDRIPTPKAPV SRSQVAKLLSSPAGPMQKIKCLKKLKSLAKENDANRRCIESTAGAVDFLASVVVEEFEHEAGEEDVVGVSFVDDQFSVSASDEALSLLHRLQISESGLKT LVNKNHKFVDSLARVMRSGNYESRTYAVSLAKSMFGVADPLRIIGVRSEFFGEIVQVIRDQVSRQATKAALSLLIELCPWGRNRIKAVHGGLVPALVDLL LDSNDRRPCEMAMAVLDLVCQCADGRAELVKHAAGLAVVSKKMLRVSSVVTEKAVRVLLSVGKSSASSIVLQEMLQIGVVAKLCLVLQVESSHKAKDKAT ELLRLHARVWKNSPCMPPSLLYSYPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10029393 [exp]	0	1
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10017629 [exp]	1.4	0.9743
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10024676 [exp]	3.0	0.9784
AT1G15170			MATE efflux family protein (.1...		Lus10018134 [exp]	5.3	0.9717
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10040116 [exp]	6.0	0.9728
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	11.4	0.9688
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10023824 [exp]	12.0	0.9735
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10029896 [exp]	13.9	0.9723
AT4G23690			Disease resistance-responsive ...		Lus10032331 [exp]	14.1	0.9708
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	15.0	0.9711
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10036800 [exp]	15.5	0.9613

Compare expression of checked genes

Lus10029393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.