Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004190 [exp] 103 / 1e-29 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029394 pacid=23139781 polypeptide=Lus10029394 locus=Lus10029394.g ID=Lus10029394.BGIv1.0 annot-version=v1.0 ATGGCATTACAACCCCCCTTCACCTTGGAGTTCATGGCAATTCGTAGAGCTCTCTCTGAGGCGTCGTATTGGCTTCCTGCGGCGGCGGTTGCTATGGGGT ACTGGAAATATATCTTCGCAGACTACGCGAAATGGATTGCCTGCTGCTCATTCTTCGTTGCGATGAGAGAAATCAGCCGCCGCGATCTTGACACTCCTTC TTGGATCTTGGCATTTGGGGGTTGTATTGTGCTGTATGGACTGGCGATCTGCTACTTCGGCGAGGTCAAGCACCGGAATTTGCGCGCTCCGGCTCCGGCG GCCGGAGAAGAAGAGGAAGATCTTGAAGAGAATGAAAAGACGCCTCTCCTGGCGGAAGGAGGAAAAGCTTTAGGAGTTCCAGGATTGAATCGATCTGTTG TTAGTAACTAG
AA sequence Show only first row Show all	>Lus10029394 pacid=23139781 polypeptide=Lus10029394 locus=Lus10029394.g ID=Lus10029394.BGIv1.0 annot-version=v1.0 MALQPPFTLEFMAIRRALSEASYWLPAAAVAMGYWKYIFADYAKWIACCSFFVAMREISRRDLDTPSWILAFGGCIVLYGLAICYFGEVKHRNLRAPAPA AGEEEEDLEENEKTPLLAEGGKALGVPGLNRSVVSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029394 [exp]	0	1
AT2G47640			Small nuclear ribonucleoprotei...		Lus10026556 [exp]	1.0	0.9339
AT2G47640			Small nuclear ribonucleoprotei...		Lus10030367 [exp]	2.0	0.9051
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	3.2	0.8803
AT2G47640			Small nuclear ribonucleoprotei...		Lus10013840 [exp]	4.0	0.8824
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10039097 [exp]	5.2	0.8966
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10023091 [exp]	5.5	0.8916
AT3G02080			Ribosomal protein S19e family ...		Lus10010339 [exp]	5.7	0.8934
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026269 [exp]	6.5	0.8763
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	6.5	0.8834
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	6.8	0.8458

Compare expression of checked genes

Lus10029394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.