Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11840 277 / 2e-88 PUB24 plant U-box 24 (.1) AT2G35930 250 / 1e-78 PUB23 plant U-box 23 (.1) AT3G52450 238 / 7e-74 PUB22 plant U-box 22 (.1) AT3G19380 125 / 1e-31 PUB25 plant U-box 25 (.1) AT5G65920 113 / 3e-27 ARM repeat superfamily protein (.1) AT1G49780 112 / 4e-27 PUB26 plant U-box 26 (.1) AT3G49810 109 / 6e-26 ARM repeat superfamily protein (.1) AT1G66160 108 / 2e-25 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT5G37490 96 / 3e-21 ARM repeat superfamily protein (.1) AT3G54850 84 / 5e-17 ATPUB14 plant U-box 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004191 [exp] 749 / 0 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10013584 [exp] 281 / 2e-90 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10021267 [exp] 278 / 2e-89 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10016166 [exp] 278 / 3e-89 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10000800 [exp] 274 / 1e-87 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10029393 [exp] 266 / 2e-84 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10008368 [exp] 265 / 3e-84 AT3G11840 284 / 2e-91 plant U-box 24 (.1) Lus10004095 [exp] 126 / 1e-33 AT2G35930 228 / 3e-73 plant U-box 23 (.1) Lus10013352 [exp] 118 / 2e-30 AT2G35930 212 / 6e-67 plant U-box 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202700 [exp] 422 / 9e-146 AT3G11840 362 / 3e-122 plant U-box 24 (.1) Potri.016G069500 [exp] 404 / 8e-139 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.009G016100 [exp] 303 / 2e-99 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.001G216300 [exp] 296 / 9e-97 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.016G069400 [exp] 280 / 3e-90 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.001G216100 [exp] 278 / 1e-89 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.006G202600 [exp] 275 / 3e-88 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 268 / 2e-85 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.014G101100 [exp] 183 / 5e-53 AT2G35930 266 / 3e-85 plant U-box 23 (.1) Potri.002G174500 [exp] 176 / 4e-50 AT2G35930 249 / 9e-79 plant U-box 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10029395 pacid=23139911 polypeptide=Lus10029395 locus=Lus10029395.g ID=Lus10029395.BGIv1.0 annot-version=v1.0 ATGGAGAAATCAGATGATCAAGAATTACCAGAGATTCCTCAATACTTCATGTGCCCAATCTCCCTACAGATAATGAAGGATCCGGTGACGGCGGTCACCG GAATAACCTACGACAGGGAGAGCATCGAGCATTGGATCTTCACTCGCCGGAACACCACGTGTCCTGTCACCAAGCAGCCTCTTATCTCCGGCAACGACGA CTCGGTCCTCCTCGACATAACCCCTAACCACACCCTCCGCCGTCTTATTCAGTCGTGGTGTACATGTCACGGACGTGATCGTATCCCCTCCCCCAAACCG ATACTCGACCGGTTTCGAGTCGGTAAGTTGCTTCGCGGGTTGTCGTCGGACCGGATTCTGGTTCTCCGCCAGCTCGAAGCGCTCGCTTCAGAGCATGAGC GGAATTGGAGGCATCTTGTGGATTCGGGCGTGCCCGAGGCTATGTTTGAGATCGTGCTTGAGTCATTCGATTCTCAGGATGTTGGTGTGATAGGGTTGAG TGAGGCGGTGAGGGTGCTTCGATTGGTTCGTATTTGTTCGAACGGGAGTAGATCGAAATTTTTAAGAAATGATCGGGTCATGGAGTCGCTGACGTGGCTG ATGGGTTTTAATGGAACCAAGAAAGACGTCGACCATGTTGCAATCCGGAATAATGCAGTCTCTGTTATGAGATTGCTTTTGGAAGAAGCGGGTCTAACTG TTTTAGAACGGTTGAGGCCTGACTTCTTTAAAAAGATAGTGTGGTTTTTGAAAAATAGGCCCCACAACGATCAGCATGCAATCAACTCTGCGTTGACCGT GATGTTACAAGCTTCCCCTTGGGGGAAGAACCGCATTGCGATGGTGGAATCAGGCGCGGTGTTCGAGCTTTTGGAGCTCGAACTAGCCCTAACCGGTTCT TTAACGGAAAGCAAGAGGACGACAGAGCTAGTCTTTGGGGTTCTGTTCAACCTATGTTGTTGCGCGGAGGGGAGAGCAAAGTTTTTGACACACAGGGCAG GGATCGCCGCTGTCGCAAGGGTGATAATGAAGGTGTCACCGGCAGTTGACGAGAGGGCGGTGATGATTCTGTCGTCGGTCTGTAAATTCTCGGGGACGAA TGTCGTCCTGCAGGAGATGCTGACCATGAACGCGGTCTCGAAGCTGTGCCTGCTCATGCAGTCGGACGCGACATCGTACTTGAAGGAGAAGGCCGCAGAG ATGTTGAGGATCTACTCCAGCGAGGAGTGGAAGAGCAACCCTTGCATGGATGCATGCCTATTGTCAAGGGTTGTATTGTATGGACTGGCGATCTGGTACT TCAGCGAGATCAAACGCCGGAATTTGCCACAACATAGCTGGTTTGTTGTGATCGTATAA
AA sequence Show only first row Show all	>Lus10029395 pacid=23139911 polypeptide=Lus10029395 locus=Lus10029395.g ID=Lus10029395.BGIv1.0 annot-version=v1.0 MEKSDDQELPEIPQYFMCPISLQIMKDPVTAVTGITYDRESIEHWIFTRRNTTCPVTKQPLISGNDDSVLLDITPNHTLRRLIQSWCTCHGRDRIPSPKP ILDRFRVGKLLRGLSSDRILVLRQLEALASEHERNWRHLVDSGVPEAMFEIVLESFDSQDVGVIGLSEAVRVLRLVRICSNGSRSKFLRNDRVMESLTWL MGFNGTKKDVDHVAIRNNAVSVMRLLLEEAGLTVLERLRPDFFKKIVWFLKNRPHNDQHAINSALTVMLQASPWGKNRIAMVESGAVFELLELELALTGS LTESKRTTELVFGVLFNLCCCAEGRAKFLTHRAGIAAVARVIMKVSPAVDERAVMILSSVCKFSGTNVVLQEMLTMNAVSKLCLLMQSDATSYLKEKAAE MLRIYSSEEWKSNPCMDACLLSRVVLYGLAIWYFSEIKRRNLPQHSWFVVIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10029395 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10006692 [exp]	1.0	0.9765
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027480 [exp]	5.5	0.9709
					Lus10024873 [exp]	7.7	0.9627
AT1G14550			Peroxidase superfamily protein...		Lus10009900 [exp]	7.7	0.9753
					Lus10021010 [exp]	11.5	0.9581
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10039416 [exp]	15.2	0.9430
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10016720 [exp]	15.9	0.9618
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003147 [exp]	17.0	0.9597
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012724 [exp]	18.1	0.9649
AT2G20815		QWRF3	QWRF domain containing 3, Fami...		Lus10018555 [exp]	18.2	0.9469

Compare expression of checked genes

Lus10029395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.