Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07840 248 / 9e-81 Sas10/Utp3/C1D family (.1.2.3) AT2G43650 72 / 7e-14 EMB2777 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004194 [exp] 529 / 0 AT5G06350 432 / 3e-136 ARM repeat superfamily protein (.1) Lus10012061 [exp] 65 / 2e-11 AT2G43650 400 / 2e-131 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1) Lus10027922 [exp] 64 / 3e-11 AT2G43650 385 / 1e-124 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G152200 [exp] 308 / 2e-104 AT1G07840 298 / 9e-101 Sas10/Utp3/C1D family (.1.2.3) Potri.013G125800 [exp] 81 / 2e-16 AT2G43650 401 / 6e-131 EMBRYO DEFECTIVE 2777, Sas10/U3 ribonucleoprotein (Utp) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04000 [flax] [poplar] Sas10_Utp3 Sas10/Utp3/C1D family
Representative CDS sequence Show only first row Show all	>Lus10029397 pacid=23139924 polypeptide=Lus10029397 locus=Lus10029397.g ID=Lus10029397.BGIv1.0 annot-version=v1.0 ATGGAGGACCCAACGACTGATCAAGAATCAAATCAGCGGATAAAAATGGAGGCTCCTCAGCTATCAGCAGTTCTGAGAGAAATTAAGCAAGGTTTGGAGA AAGTGAGAGGGAATGTTGAAAGCTTGACTGCTAAGGTAAAAGATAATAAGTATCCAACTGCTGATGGAATGAGCTATCTAGAAGCTAAACATTTGTTACT CATACAATATTGCCAATCGCTAGTGTACATCATGCTCCGAAAAGCGAAAGGCTTGTCAATTCAGAATCATCCTGCTATTCAAAGCCTTGTTGAGACGAGA TTGTTTCTGGAGAAGGTGCAAAAGATAGACAAAAAGCTTGATTATCAGATTAAAAAGCTTATAACGGATGCTTCACGTCCTCCTCCGAATCAAGTCAATG CAGAAGCAGAGAGCAATATGGATGCTGCTGCTGATAATCCAGAGGATCCTTTGAAGTTTCGTCCCAACCCGGATATGCTTATTAGTAACAAACCAGGGGT TGATGCTGCTGCTGGTGTTTATAAACATCCAAGATTTGCCCCAACGAAAATGGAGGATAATGACAAGCAAACAAGGGAAAAAAGGAATGCTTTTAGAAAA GATAAAGACACTGAGAGACGATCGAAGCAGGGGTACACGAAAGAAATATTCGACGACCTGCAAGGGAAACCAGAAGAGGTTAAAGAAACTTATGGACACG ATAGTAGGGAATTCGAAAAGTATCAGAGAGATTATGACGAACGTCAGAAGCAGGAAGAAGAAACTTTCACCCGTGGTAATATTAGCAAGGCAGAGAAGAG AAAGTTGAGACAGTTGAAGAAGTCGAGAGGAGGGTTGCTTGGTGTGACTGATGATTTCTATGACGATGTGAAATCCTTACCATTGTTTGATGGAGCTGGA GAAGAAGAAAAAAGAGGAAGTAGCAGTCGTGGAATGGGGAAGCAGAACAAACGCAAGGTATAG
AA sequence Show only first row Show all	>Lus10029397 pacid=23139924 polypeptide=Lus10029397 locus=Lus10029397.g ID=Lus10029397.BGIv1.0 annot-version=v1.0 MEDPTTDQESNQRIKMEAPQLSAVLREIKQGLEKVRGNVESLTAKVKDNKYPTADGMSYLEAKHLLLIQYCQSLVYIMLRKAKGLSIQNHPAIQSLVETR LFLEKVQKIDKKLDYQIKKLITDASRPPPNQVNAEAESNMDAAADNPEDPLKFRPNPDMLISNKPGVDAAAGVYKHPRFAPTKMEDNDKQTREKRNAFRK DKDTERRSKQGYTKEIFDDLQGKPEEVKETYGHDSREFEKYQRDYDERQKQEEETFTRGNISKAEKRKLRQLKKSRGGLLGVTDDFYDDVKSLPLFDGAG EEEKRGSSSRGMGKQNKRKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Lus10029397 [exp]	0	1
AT1G60560			SWIM zinc finger family protei...		Lus10025765 [exp]	1.0	0.8694
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10029059 [exp]	4.2	0.8346
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	4.2	0.8583
AT1G26880			Ribosomal protein L34e superfa...		Lus10042199 [exp]	6.0	0.8553
AT5G06350			ARM repeat superfamily protein...		Lus10004194 [exp]	6.5	0.8576
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10006873 [exp]	7.7	0.8323
AT1G01150			Homeodomain-like protein with ...		Lus10042361 [exp]	8.4	0.8189
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027615 [exp]	8.5	0.8137
AT3G18510			unknown protein		Lus10032475 [exp]	8.8	0.8438
AT3G47630			unknown protein		Lus10024227 [exp]	9.2	0.8318

Compare expression of checked genes

Lus10029397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.