Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06340 219 / 1e-71 ATNUDX27 nudix hydrolase homolog 27 (.1) AT3G10620 208 / 2e-67 ATNUDX26 nudix hydrolase homolog 26 (.1) AT1G30110 163 / 2e-50 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT5G47650 49 / 1e-06 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G25434 48 / 3e-06 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT4G12720 47 / 6e-06 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) AT2G04450 45 / 1e-05 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT5G47240 44 / 8e-05 ATNUDT8 nudix hydrolase homolog 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004195 [exp] 426 / 4e-153 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10021279 [exp] 224 / 2e-73 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1) Lus10016956 [exp] 223 / 3e-73 AT5G06340 253 / 3e-85 nudix hydrolase homolog 27 (.1) Lus10021278 [exp] 219 / 1e-71 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1) Lus10018988 [exp] 211 / 1e-68 AT3G10620 288 / 8e-100 nudix hydrolase homolog 26 (.1) Lus10016955 [exp] 199 / 1e-63 AT5G06340 231 / 6e-77 nudix hydrolase homolog 27 (.1) Lus10033839 [exp] 195 / 5e-62 AT3G10620 281 / 2e-96 nudix hydrolase homolog 26 (.1) Lus10003714 [exp] 163 / 3e-50 AT1G30110 275 / 6e-96 nudix hydrolase homolog 25 (.1.2) Lus10013459 [exp] 145 / 4e-39 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203700 [exp] 239 / 2e-79 AT5G06340 253 / 4e-85 nudix hydrolase homolog 27 (.1) Potri.016G070900 [exp] 239 / 2e-79 AT5G06340 258 / 2e-87 nudix hydrolase homolog 27 (.1) Potri.008G017900 [exp] 207 / 8e-67 AT3G10620 270 / 2e-92 nudix hydrolase homolog 26 (.1) Potri.010G242100 [exp] 201 / 2e-64 AT3G10620 290 / 2e-100 nudix hydrolase homolog 26 (.1) Potri.008G130100 [exp] 175 / 4e-55 AT1G30110 300 / 8e-106 nudix hydrolase homolog 25 (.1.2) Potri.010G112000 [exp] 173 / 3e-54 AT1G30110 302 / 2e-106 nudix hydrolase homolog 25 (.1.2) Potri.014G168400 [exp] 51 / 3e-07 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 47 / 4e-06 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.006G005400 [exp] 45 / 3e-05 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 44 / 4e-05 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10029398 pacid=23139775 polypeptide=Lus10029398 locus=Lus10029398.g ID=Lus10029398.BGIv1.0 annot-version=v1.0 ATGTGGTCGTCGTCGTCGTGTGAGGTTATCGGAATAAGTTCGCAAGTTTACATCGTCGGTGGTGGCGAAGGTCGATACTTCCGTTCGAATTCCACCAAAT TTACTCGAGTGCCATCGGTTTCCTGCTGCAAGAGTAAAAATCAATGTAATTCCTCTGGTTTAGTATCGGCAGGGAGAGCCAACAATGCGGCGTCCACATT AATCACGAAGAAGCCTCCTCGTGGGTATCGGAGAAACGTTGGAATTTGCCTCGTTAATCCCTCCAAAATGGTTTTCATGGCGTCGAGGGTACACAACACA GGTTTGTGGCAAATGCCTCAGGGTGGTGCGAACGAGGGGGAAGATCTCCGGAGTGCGGCCATGAGAGAGTTGCAAGAGGAAACAGGTGTTACTTCAGCTG AGTTTCTAGCCGAGGTAGAGTCTAGTTACACGTTTCTGGTTAAGATGGCTCGTTGGGAATTTGAGGAGGCACCCTATTGGATGAGTTATGATTTCCCACT ACATAAGAGAGAAATGGTTAATCGGAGATGGGGTACAAACTATAAGGGGCAAGCTCAAAAATGGTTTCTTTTCAAGTTTACTGGAAAGGAGGAAGAGATA AACATTTCCGGCGATGGATCTGAAACACCTGAATTTAAGCACTGGTCATGGATACTAGCAGATCAAGTGGTTGAATTTGCTATGGATTTCAAGAAGGCAG ACTATCGAGAAGTCATGGAGTTGTTCAGTCCATATCTGAAGAACTATTTTGATTCAGAGCTGCAAAAGTCGGTACGCCGTAAAAGGTAG
AA sequence Show only first row Show all	>Lus10029398 pacid=23139775 polypeptide=Lus10029398 locus=Lus10029398.g ID=Lus10029398.BGIv1.0 annot-version=v1.0 MWSSSSCEVIGISSQVYIVGGGEGRYFRSNSTKFTRVPSVSCCKSKNQCNSSGLVSAGRANNAASTLITKKPPRGYRRNVGICLVNPSKMVFMASRVHNT GLWQMPQGGANEGEDLRSAAMRELQEETGVTSAEFLAEVESSYTFLVKMARWEFEEAPYWMSYDFPLHKREMVNRRWGTNYKGQAQKWFLFKFTGKEEEI NISGDGSETPEFKHWSWILADQVVEFAMDFKKADYREVMELFSPYLKNYFDSELQKSVRRKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10029398 [exp]	0	1
AT4G14147		ARPC4	protein binding (.1.2)		Lus10027499 [exp]	1.0	0.8617
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	5.1	0.8331
AT2G44870			unknown protein		Lus10020395 [exp]	8.8	0.7911
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	10.4	0.7800
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10022853 [exp]	11.0	0.7668
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10004987 [exp]	11.0	0.7837
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	11.0	0.8010
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10041952 [exp]	11.2	0.7933
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10028945 [exp]	15.9	0.7422
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10013513 [exp]	17.5	0.7987

Compare expression of checked genes

Lus10029398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.