Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06350 674 / 0 ARM repeat superfamily protein (.1) AT5G27010 596 / 0 ARM repeat superfamily protein (.1) AT4G04680 173 / 1e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004194 [exp] 1248 / 0 AT5G06350 432 / 3e-136 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G095700 [exp] 855 / 0 AT5G06350 753 / 0.0 ARM repeat superfamily protein (.1) Potri.001G208900 [exp] 847 / 0 AT5G06350 756 / 0.0 ARM repeat superfamily protein (.1) Potri.011G096201 [exp] 86 / 5e-20 AT5G06350 51 / 1e-08 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12333 [flax] [poplar] Ipi1_N Rix1 complex component involved in 60S ribosome maturation
Representative CDS sequence Show only first row Show all	>Lus10029399 pacid=23139930 polypeptide=Lus10029399 locus=Lus10029399.g ID=Lus10029399.BGIv1.0 annot-version=v1.0 ATGCCTAAAAGCAAGGCTTCTTCAAAGAAGCAGCAAAAGCGTGGGATTGACTTCAAGAAAATAAAAAGGAAGATCGGTAGGAAGTTGCCGCCGGCACAGA ACACCACTAACACTGAAGTTAAATCGAAAGCAATTGTTCTCCCTGAGCAGAGTGTGGCATCGGAGAAAGCAGGCTTGGCTGTAAGCAAGAAAGGATTGAC ATTGAAAGAGCTTCTACAACAAACATCCCATCACAATGCCAAAGTTCGTAAAGATGCATTATTGGGCATGAGAGATTTGCTCCTCAAGTTCCCGGCGGAA TTGAAGTCACACAGATATGCTGTGATAGAGAAGTTACGTGAACGCATCAGTGATGATGATAAAATTGTTCGAGAAAATCTATATCAATTACTCAAGTCAG TTATCTTGCCTGCCTGTCAAGAGGATAATCACGGACCTTTCGTATATATGATGATGGCTTACATTTTCAATGCTATGACACATTTGGCAATTGACGTTCG GCTGATGGCTTTCAAGTTTGTCAATCTCATTGTACAATATTATCCAGATGCTTTTTTTATGCATGCTGAAAAGATCTTACAAAACTATGAAACTATTCTG AGGAGCAACCAGTTTGATCTGCAATACAAGAGCAAGCTCATGAATGTTCTTGCTGGATTAGTATGCTGCTTGTCCCTGTTGCCATCTGAAAAGAAAGAAG TTAATTCACCTGGACAGGATTCTGTCACCCAGGAAGTACTTCATGCTTTCGAACCAGATAAACCTACTGAATCTGCTGAATTGTCCATCATTGACAAAAA ACTGAAGGAACTGTTGCCAGTATTGCTCAGCTGCTTTCAAGACTTCATTCCATCAACTCAAGGCATGACCCGGCTAGATGCGCAATCATTTGATTGCATG CTTAACATTCTGCAAAGCATAGTTCTTGCTATTAGGTTCTTTATTTATAGGATCGGCAAGGATAACTTGGACTTACAGTGTCTTGATGGAAGTCACGAGG TGCCTTTATGGGATCATAGGATCTCGCCAATAGTAAAGAAGTTGTTAGGTCTGTTTCCATTGAACTCAACTCGTGACCTCTCAGGAAAGGATGATGATAG ATATTTCATCTTGAACATTCAAATTACCGAGATATTTCTGTGCACAAACGAGTATATGGAGCCTTCTCCTGACTTGTCCATAAAATATCTGACATTTATG GAAAATGTACTGAAGGTCAGTGATAAAGATTCTAGCAAAACAGGTAGGGAAAAGCAGATGCTTCCACTGATTCCGTTTCTCCCGAAGCTTGTTTCACAAG TTACAGAGGACTGGAAAGCTCAGCTTCTTCAGGCATTTACAAAGGCATTCCAGGAATGCAGTCCAGATTCCAAAATAAAAATGGTGTCCCTTGAAGTAAT TGAAGAAATGCTAATAAATAGAGAAGACGGGTGGTTCCTGAATGCAAGTGATTCAGGACTTTTGAACTGTCAGATTAGTTGGATGAGAGAGCTTCCTCAA CTGTTAATTCAGCTTGGCGATAGGCACCCCTCATCTTCCCAGGTTGTGTTGCGTCTTATTCTTCGCTTGGGCCAATATTCAGGCTCGAACTCTTTTCTGG CCTCGGAATATGATAACCTGCAGTGTTCACTGGAGGAGTTCTACAGCATAAGCCAACAAGGCAAGGAAAACACATTTTGGGCCTTTCATAAAGCTCCCGA AAGGTCCTTAGCATCATGTTGCCTATGCCACAAGTTGGATGAATCCTTGATTCTCCGGATGATAGAGGTTCTGCATTCTTCTTATTGTGCTGGCCATATT CAGATCAGTGACCATGTTAGCTTCCTCGTGACTTTGTTATCCCGTTTTGTAGCATCACCTGCAAGTATTAGTTATTCCATGGAGACTGCCGCAATGGCCA ATAATCATGGAATCTTAAAGTCCATGACCAGTGCTATTAGTACCTGCCTGTCACAGTTGGGGGACAAGTCTCTAGTTTTCCTTATGCTGGAAGGAGTGAT AACGGAGCAATTGTCATCGAAGCCATCTTTACACAACGCTCATGCTATGCTTAGAGTGCTGGTTGTGCTGGATTCCAAACCCACAAAACTTTCCGAACAA AGCATCTTGTGTCTTGGCAACTATCTTGCAGGATACCTGATTGATGTCGTACAGAATATCCAAGAAGAAGGTGACTACGTTGAAGCATCGCGTTACTATC TCCTGCCGTGTTTTTTCATGTTCGACAGGAGTCGCAGGCTTCTGGACCTAGTATTGACGGCGATGGTATCACTGATACAGGAGTACACAACATCTGTTTT GCCCAGCAACAATTCCGGTTCAACGCTCTCGAGTAAGATAGAGAGCATTGTTGGGGTGTTACTCTTGATGTACCGAGAAGCCAAGATCTGGAGACTGGTT TGTTCATCCAAGGACGCTGTGGCCCATATTTTGCGAAGCATACAGTCACTGCTGGTAATTGGCTCTAACCTCGCAAAATTAAAAAGGTTTAATGTTTTTT CCCTAACGATACCTACACTCGGATCTCGATGGATAAGTCTTTAG
AA sequence Show only first row Show all	>Lus10029399 pacid=23139930 polypeptide=Lus10029399 locus=Lus10029399.g ID=Lus10029399.BGIv1.0 annot-version=v1.0 MPKSKASSKKQQKRGIDFKKIKRKIGRKLPPAQNTTNTEVKSKAIVLPEQSVASEKAGLAVSKKGLTLKELLQQTSHHNAKVRKDALLGMRDLLLKFPAE LKSHRYAVIEKLRERISDDDKIVRENLYQLLKSVILPACQEDNHGPFVYMMMAYIFNAMTHLAIDVRLMAFKFVNLIVQYYPDAFFMHAEKILQNYETIL RSNQFDLQYKSKLMNVLAGLVCCLSLLPSEKKEVNSPGQDSVTQEVLHAFEPDKPTESAELSIIDKKLKELLPVLLSCFQDFIPSTQGMTRLDAQSFDCM LNILQSIVLAIRFFIYRIGKDNLDLQCLDGSHEVPLWDHRISPIVKKLLGLFPLNSTRDLSGKDDDRYFILNIQITEIFLCTNEYMEPSPDLSIKYLTFM ENVLKVSDKDSSKTGREKQMLPLIPFLPKLVSQVTEDWKAQLLQAFTKAFQECSPDSKIKMVSLEVIEEMLINREDGWFLNASDSGLLNCQISWMRELPQ LLIQLGDRHPSSSQVVLRLILRLGQYSGSNSFLASEYDNLQCSLEEFYSISQQGKENTFWAFHKAPERSLASCCLCHKLDESLILRMIEVLHSSYCAGHI QISDHVSFLVTLLSRFVASPASISYSMETAAMANNHGILKSMTSAISTCLSQLGDKSLVFLMLEGVITEQLSSKPSLHNAHAMLRVLVVLDSKPTKLSEQ SILCLGNYLAGYLIDVVQNIQEEGDYVEASRYYLLPCFFMFDRSRRLLDLVLTAMVSLIQEYTTSVLPSNNSGSTLSSKIESIVGVLLLMYREAKIWRLV CSSKDAVAHILRSIQSLLVIGSNLAKLKRFNVFSLTIPTLGSRWISL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06350			ARM repeat superfamily protein...		Lus10029399 [exp]	0	1
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10029910 [exp]	2.0	0.9228
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10025508 [exp]	3.3	0.9264
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10020393 [exp]	3.9	0.9019
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	8.9	0.9028
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	10.8	0.9062
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	13.3	0.8919
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000317 [exp]	15.5	0.8898
AT1G10490			Domain of unknown function (DU...		Lus10005792 [exp]	15.9	0.8996
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	20.8	0.8955
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10015971 [exp]	24.1	0.8800

Compare expression of checked genes

Lus10029399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.