Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34160 629 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 437 / 5e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G40405 397 / 3e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 393 / 4e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G01510 387 / 7e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 387 / 5e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 389 / 3e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G47530 383 / 4e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02980 382 / 2e-125 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G56550 380 / 4e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004197 [exp] 890 / 0 AT1G34160 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 404 / 2e-134 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 403 / 4e-133 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10029344 [exp] 400 / 2e-132 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 392 / 8e-129 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 390 / 6e-128 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029793 [exp] 380 / 5e-124 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 383 / 1e-123 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10026006 [exp] 377 / 2e-123 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G199800 [exp] 814 / 0 AT1G34160 702 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 441 / 2e-148 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G168800 [exp] 429 / 4e-144 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 414 / 1e-137 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 412 / 4e-137 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 410 / 1e-135 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 414 / 2e-135 AT3G22690 582 / 0.0 unknown protein Potri.016G029500 [exp] 404 / 1e-134 AT3G56550 740 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 407 / 4e-134 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 405 / 9e-134 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029401 pacid=23139893 polypeptide=Lus10029401 locus=Lus10029401.g ID=Lus10029401.BGIv1.0 annot-version=v1.0 ATGGCCAGCAGCTCAGTGCTGGAATCTCTGCTACCGAAGTGCACCTCACTCTCCCACGGTAAGCAACTCCAAGCTATCCTCCTCACCACCGGCCAATTCA ACTTCCTCAACATCTGCCCACCTCGCTCCAAGCTCCTCGAGCTCTACTCCTTATCGCTCAACAACCTCTCCTTCGCCATCCGCACCTTCTCCCAAATCCC TAATCCTTCAACCAACGACTGGAATGCCATCCTCCGGGGCCTCATCGTCAGCCCTTCCCCTTCCGACGCCTTCCTATGGTACAGAACCATGCTCCGAGGT TCCGACAGGGTCGACGCCTTAACTTGCTCTTTCGTCCTCAAAGCTTGTGCTCGCGTTCTGGCATTGTCCGAGTCGATTCAGCTCCACTCACAGATAACAC GCCGTGGGTTCATCGCCGATGCTTTGTTAGGCACAACTCTGTTGGACTTGTACGCCACAGGAGGAGAAATCAGGAATGGACATAAAGTGTGCGACGAAAT GTCTAAAAGAGACATTGCGTCATGGAACGCGTTGGTTTCCGGGTTGGCGCAAGGTGAAGAGCCGGATGAGGCTTTGAGTTTGTTTAAGAGGATTGGAAGT GATGGATTCAAGCCGAACGAGATCACTGTTCTTGGTGCTCTCTCTGCTTGTTCACAGCTTGGTGCTTTCAAAGAAGGTGAAAAAATCCATGAGTATATAA GAAATGAAAAGCTGGACAGGAATTCTCAGGTGTGCAATGCTGTGATCGACATGTACGCTAAATGCGGATTCATAGAGACAGCTTATTCGGTTTTCACGAC AATGACTTGTGACAAGAGTCTTGTCACTTGGAACACCATGATCATGGCTTTCGCAATGAACGGCGACTCCGACAAGGCTCTCGAACTTTTTCGTAAAAAG GGGCCCTCCGGGGTGGACCCTGCTGAAGCTTCTTATCTTGCAGCAATCTGTGCTTGTAACCATGGCGGATTGGTTAATGAAGGCTACAAATTGTTCACTT CAATGCAGGATTCTGGATCACTAACGCTTAACGTGAAGCATTACGGTAGTGTTGTCGATTTGCTAGGCCGAGCAGGACGACTCCAGCAGGCGTACAATGT GATTAACTCGATGCCAATCGTACCAGATATGGTCCTATGGCAGACATTACTCGGCGCTTGCAAGACTTACAAGAACATCGAGATGGCCGAGATCGTGACG AGGAAACTGGTGGAGATGGGGTCCAACAGCGACGGGAACTTCGTCCTTTTGTCGAACATCTACGCATCGCACGAGCGGTGGGCGGATGTCGGAAGGGTGA GGCAAGTGATGAAGAACAAAGATGTGAAGAAGATTCCTGGGTTTAGCTACATTGAGGCAAAGGGAGTGATTCATAAGTTCTACAATGGTGATAAGAGGCA TGATGAGTGGATGAAGATATATGATAAGTTGGAGGAGATGAGGTTCAAGATGAAGGAGTTTGGTTACGTGGCGGAGACGAGCTTCGTGTTGCATGATATA GGAGAGGAAGAGAAGGAGAATGCTCTGTGTTTACACAGTGAGAAGCTTGCTGTGGCTTTTGGTTTGGTGTGTGCTGAGGAGGAGGATGGGATGCCGATTC AAGTGATTAAGAACCTTAGGATTTGTGGTGATTGTCATGCGGTGATGAAGCTTGTGTCCAAGATTTATAATAGAGAGATCATTGTTAGGGATAGGGTCAG GTTTCATAGGTTTAAAGAAGGGTCTTGTTCTTGTAAAGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10029401 pacid=23139893 polypeptide=Lus10029401 locus=Lus10029401.g ID=Lus10029401.BGIv1.0 annot-version=v1.0 MASSSVLESLLPKCTSLSHGKQLQAILLTTGQFNFLNICPPRSKLLELYSLSLNNLSFAIRTFSQIPNPSTNDWNAILRGLIVSPSPSDAFLWYRTMLRG SDRVDALTCSFVLKACARVLALSESIQLHSQITRRGFIADALLGTTLLDLYATGGEIRNGHKVCDEMSKRDIASWNALVSGLAQGEEPDEALSLFKRIGS DGFKPNEITVLGALSACSQLGAFKEGEKIHEYIRNEKLDRNSQVCNAVIDMYAKCGFIETAYSVFTTMTCDKSLVTWNTMIMAFAMNGDSDKALELFRKK GPSGVDPAEASYLAAICACNHGGLVNEGYKLFTSMQDSGSLTLNVKHYGSVVDLLGRAGRLQQAYNVINSMPIVPDMVLWQTLLGACKTYKNIEMAEIVT RKLVEMGSNSDGNFVLLSNIYASHERWADVGRVRQVMKNKDVKKIPGFSYIEAKGVIHKFYNGDKRHDEWMKIYDKLEEMRFKMKEFGYVAETSFVLHDI GEEEKENALCLHSEKLAVAFGLVCAEEEDGMPIQVIKNLRICGDCHAVMKLVSKIYNREIIVRDRVRFHRFKEGSCSCKDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10029401 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	1.4	0.8961
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001017 [exp]	1.7	0.8999
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10022629 [exp]	2.4	0.8813
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	4.7	0.8330
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10012994 [exp]	4.7	0.8501
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10024433 [exp]	8.4	0.8666
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	11.0	0.8331
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001015 [exp]	11.5	0.8342
AT2G02590			unknown protein		Lus10013278 [exp]	12.7	0.8361
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	13.0	0.8443

Compare expression of checked genes

Lus10029401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.