Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06370 410 / 1e-146 NC domain-containing protein-related (.1) AT3G02700 274 / 8e-93 NC domain-containing protein-related (.1) AT1G01225 261 / 9e-88 NC domain-containing protein-related (.1) AT4G00905 258 / 3e-86 NC domain-containing protein-related (.1) AT5G16360 240 / 6e-79 NC domain-containing protein-related (.1) AT5G16330 223 / 1e-72 NC domain-containing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004198 [exp] 280 / 6e-96 AT5G06370 210 / 1e-68 NC domain-containing protein-related (.1) Lus10030231 [exp] 265 / 9e-89 AT1G01225 360 / 1e-126 NC domain-containing protein-related (.1) Lus10005981 [exp] 261 / 2e-87 AT1G01225 360 / 8e-127 NC domain-containing protein-related (.1) Lus10010962 [exp] 224 / 3e-73 AT3G02700 268 / 8e-91 NC domain-containing protein-related (.1) Lus10031362 [exp] 67 / 9e-14 AT3G02700 69 / 6e-18 NC domain-containing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203300 [exp] 460 / 5e-166 AT5G06370 396 / 4e-141 NC domain-containing protein-related (.1) Potri.004G078700 [exp] 299 / 1e-102 AT3G02700 343 / 3e-120 NC domain-containing protein-related (.1) Potri.017G142300 [exp] 298 / 3e-102 AT3G02700 328 / 2e-114 NC domain-containing protein-related (.1) Potri.014G101300 [exp] 271 / 1e-91 AT1G01225 352 / 2e-123 NC domain-containing protein-related (.1) Potri.002G174700 [exp] 270 / 7e-91 AT1G01225 333 / 7e-116 NC domain-containing protein-related (.1) Potri.013G043100 [exp] 96 / 5e-24 AT5G06370 87 / 1e-20 NC domain-containing protein-related (.1) Potri.005G056300 [exp] 42 / 7e-05 AT5G16330 49 / 1e-07 NC domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF04970 [flax] [poplar] LRAT Lecithin retinol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10029402 pacid=23139821 polypeptide=Lus10029402 locus=Lus10029402.g ID=Lus10029402.BGIv1.0 annot-version=v1.0 ATGGGTCTGCTTTCCAACAGGGTCCCGAAGGAGAGTCTTAAGCCAGGGGATCACATCTATTCATGGAGGACTGCTTACGTTTACGCTCATCACGGTATTT ACATTGGAGATGACAAAGTAGTTCATTTCACCAGAGGCGGCCAAGAAGTCGGAACCGGGACTGTCCTTGACATCATCCTAGTCAGTTCCGGCCCAGCTCG TGCTCGAGTCCCTTGCTCCACTTGTCCTTCAAGGGAAGGAGGCAACGGAGTAGTCCTGTCCTGCCTCAACTGCTTCCTCTCCGGCGGAATCCTCTACCGC TTCGAGTACGCAGTCACCCCAGCTCTCTTCCTCGCGAAAGCTCGCGGTGGAACTTGCACTCTCGCGGTCTCAGACCCTGATGATGTAGTCGTCCACCGAG CAAAGTTCCTCCAGGAGAACGGGTTCGGATGCTACAACGTGTTCAAGAACAACTGCGAGGATTTCGCTATCTACTGCAAGACGGGGCTTCTCGTTGTGGA TCAGACGACTATGGGGCAGAGTGGTCAGGCTGTGTCGATCATCGGTGGCCCTCTTGCCGCAGTGCTGTCTACTCCTCTGCGGTTGCTCACCACCAATGTC TATGGTATGGCCGCGACTGCTGTTAGTGTGTACTGTGTGAGTAGGTATGCTGCAGATATTGGAATGAGGAAGGATGTGGTGAAGGTTGCTGTGGAGGACT TGACAAGACGGCTCGCTACTGGCTTGCTCCAGGTTGTCGAACCGCAGATTGTGGCTGCTGTGCCGTTGCTGGAGAGTAGCCAGAGACAGCAGATCACCAG CTCATGA
AA sequence Show only first row Show all	>Lus10029402 pacid=23139821 polypeptide=Lus10029402 locus=Lus10029402.g ID=Lus10029402.BGIv1.0 annot-version=v1.0 MGLLSNRVPKESLKPGDHIYSWRTAYVYAHHGIYIGDDKVVHFTRGGQEVGTGTVLDIILVSSGPARARVPCSTCPSREGGNGVVLSCLNCFLSGGILYR FEYAVTPALFLAKARGGTCTLAVSDPDDVVVHRAKFLQENGFGCYNVFKNNCEDFAIYCKTGLLVVDQTTMGQSGQAVSIIGGPLAAVLSTPLRLLTTNV YGMAATAVSVYCVSRYAADIGMRKDVVKVAVEDLTRRLATGLLQVVEPQIVAAVPLLESSQRQQITSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06370			NC domain-containing protein-r...		Lus10029402 [exp]	0	1
AT2G35680			Phosphotyrosine protein phosph...		Lus10004376 [exp]	3.0	0.8745
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10031680 [exp]	5.7	0.8474
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	6.9	0.8625
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10029773 [exp]	8.5	0.7922
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	9.5	0.8582
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10018455 [exp]	9.8	0.7994
AT2G45980		ATI1	ATG8-interacting protein 1, un...		Lus10014767 [exp]	10.4	0.8275
AT3G06170			Serinc-domain containing serin...		Lus10034023 [exp]	10.5	0.8293
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10041800 [exp]	10.8	0.8305
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	11.3	0.8345

Compare expression of checked genes

Lus10029402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.