Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11670 790 / 0 DGD1 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) AT4G00550 393 / 1e-131 DGD2 digalactosyl diacylglycerol deficient 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004200 [exp] 980 / 0 AT3G11670 984 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10021273 [exp] 946 / 0 AT3G11670 1127 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10013576 [exp] 498 / 2e-168 AT3G11670 546 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10040927 [exp] 367 / 1e-121 AT4G00550 714 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10009820 [exp] 256 / 3e-79 AT4G00550 552 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10033686 [exp] 83 / 2e-18 AT3G11670 181 / 8e-54 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10004199 [exp] 0 / 1 ND 42 / 2e-11
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G070200 [exp] 882 / 0 AT3G11670 1118 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G203200 [exp] 852 / 0 AT3G11670 1117 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G079400 [exp] 373 / 1e-123 AT4G00550 717 / 0.0 digalactosyl diacylglycerol deficient 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029403 pacid=23139989 polypeptide=Lus10029403 locus=Lus10029403.g ID=Lus10029403.BGIv1.0 annot-version=v1.0 ATGAACAGCGAAACGGCGCATCCGTCGACGACGACGTCGTTATCGAGCGACGCGTTCTCCTTCATTTCGAGAGGATGGCGGGAGGTGCGGGACTCGGCCG ACGCGGATCTCCAGCTCATGCGCGCCAGGGCGAACTCGTTCAAGAACCTGGCGTCTTCCTTCGACCGCGAGCTAGAGAACTTCTTCAGCTCCGCGTCGAC GACGTTCGTCTCGTCTCCGTCGGAGAATGTGTTCGTGAAGAAGCTCCAGCCGAAGATATCGGAGCTGCGGAGGGTGTACACGGCGCCGGAGATAAGTAAG AAGGTGCTGGAGAAGTGGAGTCCTACTAAGGCCAAATTAGGGATTGATTTGTCGAGCATTAGAAACGCTCTGGTGTCTGAGTATGGTGATGATGGAGTTG TGGAGTTCGATCGGGCGTGGAGAGGGAAGAGGATGCTCAAGTTCAATGAGTTTTGGGGTGAGTGGAAAGTGGAGAGTGAAGCGAATGTGTATGAGGAGTG GAAATGGAAGCCACTGCGGGATTTGAAGAAGCGGTTTAAGGAGCTTGAGAAGAAGAGTGAGCTGGGTGAAATGCTTGAGGGGTTTAAGAACAGTGAGCTT GTGGAGAAGGTGAAATCTAGCTTGAAATCAATTCGTAAAGAGCCCCAGGATTCACAGGAAGTACCGCCACTTGACGTACCTGAACTCTTGGCAAGTTTGG TAAAGCAATCTGGGCCATTTTTGGATCAGCTTGATGTATGTGACAAGATAGTGGAAAGCTTGTGTAGTAAACGCAAGAACCAACTTCTCGGGGACTCACT GTCTACTGCAGAATCCTCCCCTGATGAGCTTGATTTGAGGATTGCTAGTGTCCTAAAGAGTACAGGTCATCATTATGAAGGTGGATTTTGGACAGACCGA GGTAACCATATCCCAGCAGATGGCAAGCGGCATGTTGCCATTGTTACAACTGCTAGTCTTCCATGGATGACTGGAACAGCTGTGAATCCTCTTTTCAGAG CAGCGTACTTGGCGCAATCAGATAAACAAAATGTCACCTTGTTGGTTCCATGGCTCTGCAAGTCAGATCAAGAACTTGTTTACCCCAACCGTCTCACTTT TAGCACACCCGAAGAGCAAGAGAGTTACATCCGCGACTGGCTTGAAGAAAGAACTGGCTTTAAATCTGATTTCAAGATATCCTTCTATCCAGGAAAGTTC TCTAAAGAAAGAAGAAGCATAATCCCCATGGGGGATACGTCTCAGTTTATATCATCGAAGGAAGCTGACATAGCTATCCTAGAAGAACCTGAACATTTAA ACTGGTATCATCATGGTAAGCGCTGGACTGATAAATTCAATCATGTCGTTGGAGTTGTCCACACAAATTACCTGGAGTATATCAAGAGGGAGAAGAATGG AGCTTTACAAGCTTTCCTTGTTAAACACATAAACAATTGGGTTGCACGAGCATACTGCCACAAGGTTCTTCGCCTTTCTGCTGCAACGCAAGAGATGCCG AAGTCGTTAGTATGTAATGTGCATGGCGTAAACCCGAAGTTTTTGCGAATAGGTGAAAAAGTTGCTGCAGAAAGGGAACTCGGGCAGCATACCTTCTCAA AAGGAGCATATTTCTTAGGCAAAATGGTATGGGCTAAGGGTTACAGAGAGCTGATAGATTTACTGGCCAAACACAAGAGCGATCTTGACGGCTTCAAGGT CGATGTATTCGGGAATGGTGAAGATGCACATGAAGTCAAGACCGCCGCTAAATAA
AA sequence Show only first row Show all	>Lus10029403 pacid=23139989 polypeptide=Lus10029403 locus=Lus10029403.g ID=Lus10029403.BGIv1.0 annot-version=v1.0 MNSETAHPSTTTSLSSDAFSFISRGWREVRDSADADLQLMRARANSFKNLASSFDRELENFFSSASTTFVSSPSENVFVKKLQPKISELRRVYTAPEISK KVLEKWSPTKAKLGIDLSSIRNALVSEYGDDGVVEFDRAWRGKRMLKFNEFWGEWKVESEANVYEEWKWKPLRDLKKRFKELEKKSELGEMLEGFKNSEL VEKVKSSLKSIRKEPQDSQEVPPLDVPELLASLVKQSGPFLDQLDVCDKIVESLCSKRKNQLLGDSLSTAESSPDELDLRIASVLKSTGHHYEGGFWTDR GNHIPADGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAQSDKQNVTLLVPWLCKSDQELVYPNRLTFSTPEEQESYIRDWLEERTGFKSDFKISFYPGKF SKERRSIIPMGDTSQFISSKEADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFLVKHINNWVARAYCHKVLRLSAATQEMP KSLVCNVHGVNPKFLRIGEKVAAERELGQHTFSKGAYFLGKMVWAKGYRELIDLLAKHKSDLDGFKVDVFGNGEDAHEVKTAAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10029403 [exp]	0	1
AT4G33480			unknown protein		Lus10003851 [exp]	3.0	0.7868
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	6.6	0.7803
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10035067 [exp]	8.8	0.7709
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10033422 [exp]	10.4	0.7683
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10034793 [exp]	15.9	0.7135
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	16.1	0.7505
AT2G45590			Protein kinase superfamily pro...		Lus10036533 [exp]	19.5	0.7300
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	25.8	0.7501
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10029289 [exp]	28.3	0.6752
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10019360 [exp]	28.4	0.7563

Compare expression of checked genes

Lus10029403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.