Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11670 278 / 2e-89 DGD1 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) AT4G00550 155 / 3e-45 DGD2 digalactosyl diacylglycerol deficient 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004200 [exp] 352 / 8e-117 AT3G11670 984 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10021273 [exp] 314 / 2e-103 AT3G11670 1127 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10013576 [exp] 305 / 8e-100 AT3G11670 546 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009820 [exp] 150 / 2e-43 AT4G00550 552 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10040927 [exp] 149 / 7e-43 AT4G00550 714 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10033686 [exp] 114 / 2e-32 AT3G11670 181 / 8e-54 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G070200 [exp] 304 / 2e-99 AT3G11670 1118 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G203200 [exp] 293 / 2e-95 AT3G11670 1117 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G079400 [exp] 156 / 1e-45 AT4G00550 717 / 0.0 digalactosyl diacylglycerol deficient 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029404 pacid=23139840 polypeptide=Lus10029404 locus=Lus10029404.g ID=Lus10029404.BGIv1.0 annot-version=v1.0 ATGAACTTCCTTAAAGGAATCGATCATGCTGATGATTCTCTCCACGGGTACAAAGTGTTCATAAACCCAAGTGTGAGTGACGTGCTCTGCACGGCAACAG CCGAGGCGCTCGCTATGGGGAAATTTGTCGTGTGTGCCGATCACCCTTCCAACGAGTTCTTCAGATCATTTCCGAACTGTCTGACGTACAAAACATCCGA AGACTTCGTCACAAAGGTGAAGGAAGCAATGGAGAGAGAGCCTCAACCTCTGACACCGGAGCAAAGATACCACCTCTCCTGGGAGGCCGCGACCCAGAGA TTCATGCAATGCTCCGATCTCGACAAGCTCTTAACAGACGACGACACAAGTTCCACGGAGAAAACGATCGCAAAAGCTGCTCCGGCGAGGAGGAAGATCA CGGAGGTGCTCGATGGAGGACTGGCATTCGCGCACTATTGCTTGACCGGTAGCGAGCTGCTTAGGCTCTGCACCGGGGCCACACCGGGCACAATGGAGTA TGACAAGCAGCACTGCAAGGACTTGAGATTGCTGCCGCCGCACGTCGAGAATCCCATCTACGGTTGGTAA
AA sequence Show only first row Show all	>Lus10029404 pacid=23139840 polypeptide=Lus10029404 locus=Lus10029404.g ID=Lus10029404.BGIv1.0 annot-version=v1.0 MNFLKGIDHADDSLHGYKVFINPSVSDVLCTATAEALAMGKFVVCADHPSNEFFRSFPNCLTYKTSEDFVTKVKEAMEREPQPLTPEQRYHLSWEAATQR FMQCSDLDKLLTDDDTSSTEKTIAKAAPARRKITEVLDGGLAFAHYCLTGSELLRLCTGATPGTMEYDKQHCKDLRLLPPHVENPIYGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10029404 [exp]	0	1
AT1G67660			Restriction endonuclease, type...		Lus10011377 [exp]	4.8	0.7964
AT2G33250			unknown protein		Lus10023703 [exp]	14.5	0.7486
AT2G33180			unknown protein		Lus10011764 [exp]	15.7	0.7734
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10025111 [exp]	24.2	0.6968
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10003874 [exp]	27.0	0.6803
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10029372 [exp]	34.8	0.7415
AT2G31890		ATRAP	RAP (.1)		Lus10006144 [exp]	38.7	0.7425
AT2G22360			DNAJ heat shock family protein...		Lus10035920 [exp]	39.0	0.7284
AT5G66530			Galactose mutarotase-like supe...		Lus10028310 [exp]	39.6	0.7457
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10041952 [exp]	47.7	0.7182

Compare expression of checked genes

Lus10029404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.