Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35940 373 / 6e-120 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT2G16400 252 / 5e-76 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G34610 251 / 2e-75 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT1G75410 245 / 5e-73 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G27220 241 / 1e-72 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT1G19700 239 / 7e-71 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G23760 228 / 8e-66 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT4G36870 225 / 5e-64 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT5G41410 214 / 5e-61 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT5G02030 192 / 5e-53 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004201 [exp] 1006 / 0 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10013579 [exp] 336 / 2e-107 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10000184 [exp] 300 / 3e-92 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 293 / 1e-89 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 290 / 2e-88 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10010633 [exp] 231 / 3e-67 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10033192 [exp] 221 / 3e-63 AT1G75410 342 / 6e-111 BEL1-like homeodomain 3 (.1.2) Lus10016790 [exp] 207 / 2e-59 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022485 [exp] 211 / 9e-59 AT4G36870 398 / 5e-128 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G069700 [exp] 569 / 0 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 561 / 0 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 414 / 2e-135 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 411 / 4e-134 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.004G159300 [exp] 300 / 2e-92 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 291 / 5e-89 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.002G031000 [exp] 260 / 3e-77 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.003G131300 [exp] 244 / 2e-71 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.001G100800 [exp] 243 / 5e-71 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.007G032700 [exp] 236 / 2e-67 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10029405 pacid=23139770 polypeptide=Lus10029405 locus=Lus10029405.g ID=Lus10029405.BGIv1.0 annot-version=v1.0 ATGAACCCATCCTACGTCCAGTACTCCGACACTCCTCCTCCTCCGCAACAACCACCGCCACCACAGTTCGTCGGAATCCCACTTGACCACCACCACCAAC AACACCACCATGAATTGTCTTCTCCTCCGGCGATACATCATCGGCAGCTTCATCACTACAATCTCTACAGCAGCGCAATTGACCCTACGGAGGCGGCTGC GCGTGAGACTCCACGCCCTCACCAGCAGGGTTTGTCCCTGACGCTCTCGGCTGCGGCGGCTGCTGCTGGAGGCGGGTACGGGTCGGGTATGTCAGAGGAC CACTGTGTACGGGTGTCGGCTGGGTCGGGTTCTTCGTCGGTAACGGTGGCTAATAATGGCGGGGGAGGGAGTGGGGTCCACAACGGGATGCAGTTAGGCG TGTTGGTGAGCTCCAAGTACTTGAAAGCTGCTCAGGAATTGCTGGATGAAGTCGTTAACGTTAACGGTAACGGTAACGGTAATGGTACTCATGGGGCCGT AAGCAAGAACGGCGAATCCGGATCAAGGAAAGCGATTAATGATAATAACAATTCGGCTGTCGGTGGCGAATCGTCAGTCGCCGGCGATGGGAAGGTTGAT GAGGGAGTGCAGCCAGCGCCGGAGCTTTCCACGGTGGAGAGGCAGGAGATTCAGATGAAGAAAGCTAAGGTCATCAGCATGCTTGATGAGGTGGAGCAGA GGTACAGGCAGTATCACCACCAGATGCAGGCGGTGATCGGAGCGTTCGAGCAAGCGGCGGGGATCGGGGCGGCGAAGACGTACACAGCTCTAGCGCTGAA GACGATCTCGAAGCAGTTCCGGTGCCTGAGAGACGCGATCACCGGCCAAATCAAGGCGGCGAACAAGAGCTTGGGAGAGGAGGAAAGTCCCGGTGGAGGT AAGATCGAAGGTTCCAGACTCAAGTTCGTCGATCACCACCTCCGGCAGCAGCGGGCGCTTCAGCAATTGGGTATGATCCAGCATAATGCTTGGAGACCTC AGAGAGGATTGCCTGAGCGATCCGTCTCCATCCTCCGCGCTTGGCTCTTTGAACACTTCCTCCATCCATATCCAAAGGATTCCGACAAGCATATGCTGGC GAAGCAGACTGGACTTACCAGGAGCCAGGTATCGAATTGGTTCATCAATGCAAGAGTTAGGCTATGGAAGCCAATGGTGGAGGAAATGTACACAGAGGAG ATGAAGGATCAGGAACAAACCAACAACAATGGAGTTTCAGGAGACAAGATCACGAGCAACAAAAGCGATCAGAATGAGGAATCCTCATCGCAATCCGTCC CATTCCGTCATGACAAGAATCTGGGTAGTAGCAGTTTCAGATCATCAGTGGACAACAATAACAACAACAATTCACCAAACCAGAATGTTCCTTCTGGGAT ATCGATCTCAACCTTCCCACCACCGATCGGAAGCCTCCGAAACCACTCTGCATTCTCCATCACCGCCTCCTCAGAACTCGAAGGGATCACTCAAGGCAGC CCCAAGAAGCCTAGAAACAACAACCACATTGACATGTTGCAGCTTCCATCCCCGACTAGCGTTCAATCAAACAACAACAACAACAACAACGATCATCATG ACCTGATCAAGTTTGTGGACGAAAGGCAGAGCCGAGATGCAGGGTACTCGTTCATGGGAGTACACAACAACTTCATGCATGGAGCATTCGGGCAGTACCC CATTGCAGAAATCGGGAGGTTCGATCCCGATCAGTTCACTCAGAGATTCTCTTCAGGAAATGGTGTCAACCTCAGTTTAGGGCTGCCACATTGTGATAAC CTCAACTTATCAGCAGCAACAACCCACCAAAGCTTTCTTCCCAACCAGAGCATCCAGCTAGGGATCAGGAGAAATGATCAGATGGGAGAAGCGAACGAGT TCGGAGCCATTGCTAGCTCCGCTGCTCCGACAACGTACGAGAGCATCAACAACATTCAGAACAGGAAAGGGTTTGCTGCGCCGCTATTGCCGGACTTTGT ATCATGA
AA sequence Show only first row Show all	>Lus10029405 pacid=23139770 polypeptide=Lus10029405 locus=Lus10029405.g ID=Lus10029405.BGIv1.0 annot-version=v1.0 MNPSYVQYSDTPPPPQQPPPPQFVGIPLDHHHQQHHHELSSPPAIHHRQLHHYNLYSSAIDPTEAAARETPRPHQQGLSLTLSAAAAAAGGGYGSGMSED HCVRVSAGSGSSSVTVANNGGGGSGVHNGMQLGVLVSSKYLKAAQELLDEVVNVNGNGNGNGTHGAVSKNGESGSRKAINDNNNSAVGGESSVAGDGKVD EGVQPAPELSTVERQEIQMKKAKVISMLDEVEQRYRQYHHQMQAVIGAFEQAAGIGAAKTYTALALKTISKQFRCLRDAITGQIKAANKSLGEEESPGGG KIEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYTEE MKDQEQTNNNGVSGDKITSNKSDQNEESSSQSVPFRHDKNLGSSSFRSSVDNNNNNNSPNQNVPSGISISTFPPPIGSLRNHSAFSITASSELEGITQGS PKKPRNNNHIDMLQLPSPTSVQSNNNNNNNDHHDLIKFVDERQSRDAGYSFMGVHNNFMHGAFGQYPIAEIGRFDPDQFTQRFSSGNGVNLSLGLPHCDN LNLSAATTHQSFLPNQSIQLGIRRNDQMGEANEFGAIASSAAPTTYESINNIQNRKGFAAPLLPDFVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	0	1
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	1.0	0.9522
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	1.4	0.9383
AT3G23880			F-box and associated interacti...		Lus10023238 [exp]	1.7	0.9185
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10029904 [exp]	2.2	0.9168
AT2G23140			RING/U-box superfamily protein...		Lus10032023 [exp]	2.8	0.9107
					Lus10040811 [exp]	6.9	0.9176
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10036167 [exp]	7.5	0.8976
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	7.9	0.9098
AT5G20700			Protein of unknown function (D...		Lus10027595 [exp]	8.5	0.8993
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10022375 [exp]	8.7	0.9020

Compare expression of checked genes

Lus10029405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.