Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11660 215 / 5e-71 NHL1 NDR1/HIN1-like 1 (.1) AT5G06330 206 / 9e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 206 / 2e-67 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35960 194 / 7e-63 NHL12 NDR1/HIN1-like 12 (.1) AT3G44220 186 / 6e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G09590 162 / 3e-50 NHL22 NDR1/HIN1-like 22 (.1) AT5G22200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35970 160 / 1e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 147 / 3e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 105 / 8e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004202 [exp] 362 / 2e-129 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1) Lus10021286 [exp] 253 / 5e-86 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 252 / 1e-85 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10000157 [exp] 165 / 2e-51 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043410 [exp] 147 / 4e-44 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034175 [exp] 139 / 5e-41 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032932 [exp] 114 / 1e-31 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013327 [exp] 111 / 4e-30 AT3G11660 147 / 2e-44 NDR1/HIN1-like 1 (.1) Lus10030193 [exp] 96 / 6e-24 AT4G01410 185 / 3e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G071500 [exp] 228 / 3e-76 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.006G204200 [exp] 216 / 1e-71 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.009G019600 [exp] 165 / 1e-51 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.005G088000 [exp] 135 / 9e-40 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 128 / 3e-37 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 124 / 3e-35 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 100 / 2e-26 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 96 / 1e-24 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G003800 [exp] 72 / 2e-15 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 64 / 3e-12 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10029406 pacid=23139902 polypeptide=Lus10029406 locus=Lus10029406.g ID=Lus10029406.BGIv1.0 annot-version=v1.0 ATGTCGGCCAAAGACTGCGGATCCCACGGCAAAAAGCGCCGGAAGCTAATCCGCCGGATCATCGCCGGAACCCTAATCTTCCTCTTCATATCCCTCCTAA CAATCCTCATAGTATGGGCAATCCTCCGCCCCAAGAAACCCACCTTCACCCTCCAAGACGCCACCGTGTACGCCTTCAACGCCACGTCATCACCGACCTC CCAGCTCACCTCCAACTTCCAGCTCACCTTCCTCACGGCGAACCCCAACTCCAAGATCGGTGTCCACTACGACAAGCTCGACGTCTACGCGCGGTACCGC AGCCAGCAGATCACGCTCCGCACGCGCATCATGCCTTTCTACCAGGGCCGGAAGGAAGTCAACGTCTGGTCGCCGTTTGTGTACGGCACGTCCGTCCCCG TCGCTCCGTTCAACGTGGGACCGCTTTCGCACGACCAGGATATCGGGAGCGTGATGATCACGGTTGAGATGGATGGCCGGGTGAGGTTTAAGGTTGGGAG CTTCGTCTCCGGGGGGGACCGTTTATTTTCTAAGTGCTCGGCGTTTATACAGTTTGGGAATTGGAGTGGTAACGGCGCCGTTAAGTATCAGCTGAGTGAG AGGTGCAGCGTCAGCGTTTAG
AA sequence Show only first row Show all	>Lus10029406 pacid=23139902 polypeptide=Lus10029406 locus=Lus10029406.g ID=Lus10029406.BGIv1.0 annot-version=v1.0 MSAKDCGSHGKKRRKLIRRIIAGTLIFLFISLLTILIVWAILRPKKPTFTLQDATVYAFNATSSPTSQLTSNFQLTFLTANPNSKIGVHYDKLDVYARYR SQQITLRTRIMPFYQGRKEVNVWSPFVYGTSVPVAPFNVGPLSHDQDIGSVMITVEMDGRVRFKVGSFVSGGDRLFSKCSAFIQFGNWSGNGAVKYQLSE RCSVSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10029406 [exp]	0	1
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	1.4	0.9583
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	3.2	0.9562
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	3.5	0.9523
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	4.2	0.9535
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	5.0	0.9461
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10001816 [exp]	5.5	0.9393
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10036777 [exp]	7.1	0.9007
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	7.3	0.9404
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10036922 [exp]	8.0	0.9134
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	9.2	0.9403

Compare expression of checked genes

Lus10029406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.