Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52480 43 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004203 [exp] 235 / 3e-79 AT3G52480 77 / 3e-17 unknown protein Lus10016965 [exp] 110 / 1e-30 AT3G11640 69 / 7e-15 unknown protein Lus10000027 [exp] 87 / 2e-21 AT3G11640 63 / 8e-13 unknown protein Lus10016964 [exp] 72 / 2e-16 AT3G11640 62 / 3e-13 unknown protein Lus10021290 [exp] 69 / 4e-15 AT3G11640 61 / 2e-12 unknown protein Lus10023421 [exp] 58 / 5e-10 AT5G59350 115 / 2e-30 unknown protein Lus10040302 [exp] 54 / 1e-08 AT5G59350 117 / 3e-31 unknown protein Lus10016568 [exp] 54 / 1e-08 AT5G59350 166 / 1e-49 unknown protein Lus10040839 [exp] 48 / 2e-06 AT5G59350 160 / 2e-47 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G204400 [exp] 94 / 9e-24 AT3G52480 74 / 5e-16 unknown protein Potri.016G071700 [exp] 89 / 7e-22 AT3G52480 47 / 3e-06 unknown protein Potri.001G238300 [exp] 60 / 8e-11 AT5G59350 146 / 1e-41 unknown protein Potri.008G054400 [exp] 56 / 3e-09 AT5G59350 91 / 8e-21 unknown protein Potri.009G029300 [exp] 55 / 6e-09 AT5G59350 161 / 1e-47 unknown protein Potri.010G206100 [exp] 54 / 9e-09 AT5G59350 111 / 1e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029407 pacid=23139857 polypeptide=Lus10029407 locus=Lus10029407.g ID=Lus10029407.BGIv1.0 annot-version=v1.0 ATGAATTTCATCAACAAGCTCGGCCTAGCACTAACCGCCATCTTCGTCATATCCTTAGTCTTCCTCGCGTTCCAGATTCTCTACCTCCTCTGGCGCCGGA AAAGAAGATCTCACTCACCGGATCCCCGCCACGTGGAGCTTGGCGGCCACCAGCCTATTTCGCCGTCGTCCAAAGAGGTCCTATACTTCTTCTGCTGGAA GAATCACCACCAGGCCAATCGCGTCGAGCCTACCGTTGTAGTTTCCGAGGCGACAGTTGATACCACGGCGTCGGCGTTGGTTGAGGAGGAGTTCGAGGAA ATGGTCAAACTGCACGAGCTGTACGGTCCTTCGAGGACTCTGTTCACGATCAAGGAGGAAACAGAGATGGAGAGTGAACTCGGCTCCTTCCGCCAAAATG ACGTCGTAGTAGAGATTAAGAAGGCTGACGTGGATGATGCCTTAACGGCGACGGCAGCAGTGGATGACGATGATGAGGATGTAACATCGTTTAATACGCC GTGCGGTTCCCCACCGTACTACACGCCATCGCCGTCTCCACCTAGCGAAGAAAACGGCGCGTCGTATAGGGGAAACGTTACGGGCAAAACAGCTGGCCGT TAG
AA sequence Show only first row Show all	>Lus10029407 pacid=23139857 polypeptide=Lus10029407 locus=Lus10029407.g ID=Lus10029407.BGIv1.0 annot-version=v1.0 MNFINKLGLALTAIFVISLVFLAFQILYLLWRRKRRSHSPDPRHVELGGHQPISPSSKEVLYFFCWKNHHQANRVEPTVVVSEATVDTTASALVEEEFEE MVKLHELYGPSRTLFTIKEETEMESELGSFRQNDVVVEIKKADVDDALTATAAVDDDDEDVTSFNTPCGSPPYYTPSPSPPSEENGASYRGNVTGKTAGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52480			unknown protein		Lus10029407 [exp]	0	1
AT5G59350			unknown protein		Lus10016568 [exp]	4.2	0.9600
AT2G41610			unknown protein		Lus10030172 [exp]	5.0	0.9665
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10039132 [exp]	5.1	0.9487
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028716 [exp]	6.2	0.9454
AT4G08850			Leucine-rich repeat receptor-l...		Lus10008229 [exp]	7.0	0.9579
AT3G51325			RING/U-box superfamily protein...		Lus10040617 [exp]	8.3	0.9630
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10010789 [exp]	8.5	0.9609
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10043326 [exp]	8.8	0.9654
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10016301 [exp]	9.7	0.9607
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10025879 [exp]	13.0	0.9463

Compare expression of checked genes

Lus10029407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.