Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52500 449 / 2e-155 Eukaryotic aspartyl protease family protein (.1) AT5G45120 169 / 4e-47 Eukaryotic aspartyl protease family protein (.1) AT3G25700 161 / 3e-44 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 144 / 8e-38 Eukaryotic aspartyl protease family protein (.1) AT2G03200 137 / 2e-35 Eukaryotic aspartyl protease family protein (.1) AT3G59080 137 / 4e-35 Eukaryotic aspartyl protease family protein (.1.2) AT1G01300 132 / 9e-34 Eukaryotic aspartyl protease family protein (.1) AT4G16563 129 / 2e-32 Eukaryotic aspartyl protease family protein (.1) AT3G61820 125 / 3e-31 Eukaryotic aspartyl protease family protein (.1) AT3G54400 118 / 6e-29 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004204 [exp] 802 / 0 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10016967 [exp] 436 / 1e-150 AT3G52500 330 / 2e-109 Eukaryotic aspartyl protease family protein (.1) Lus10021293 [exp] 405 / 9e-140 AT3G52500 369 / 1e-125 Eukaryotic aspartyl protease family protein (.1) Lus10013324 [exp] 172 / 3e-51 AT3G52500 177 / 2e-53 Eukaryotic aspartyl protease family protein (.1) Lus10007466 [exp] 181 / 4e-51 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005211 [exp] 171 / 2e-50 AT3G52500 179 / 2e-54 Eukaryotic aspartyl protease family protein (.1) Lus10028941 [exp] 165 / 4e-45 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 159 / 4e-43 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10000725 [exp] 154 / 2e-41 AT4G16563 508 / 2e-177 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G071900 [exp] 487 / 3e-170 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 486 / 5e-170 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 387 / 6e-131 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.003G076300 [exp] 168 / 2e-46 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 166 / 8e-46 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G158600 [exp] 161 / 5e-44 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 154 / 1e-41 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 150 / 8e-40 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G002100 [exp] 145 / 1e-38 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 139 / 3e-36 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10029408 pacid=23139895 polypeptide=Lus10029408 locus=Lus10029408.g ID=Lus10029408.BGIv1.0 annot-version=v1.0 ATGGCTTCTTATCCACTCCTCCTCCTCTCCTTCTCCACCGTCTTCCTCCTCTCCACCGCCACAACCTCCGGAATCACAATCCCACTCTCCCCATCCACCA CCGCCCCATCCTCCTCCTCCGCCACCTCCCTCCACCAAATCCTCTCCCACCTCGCTTCCACATCCGTCGCCAGAGCCCTCCGCCTCAAATCACTCTCCCC ACTCACAACCTCCCTCACCGCCGTCAAATCCCCACTGTTCCCCCGGAGCTACGGCGGATACTCAATCTCCCTCTCCTTCGGCACCCCACCCCAAACCACC AAATTCGTCATGGACACCGGAAGCTCCCTAGTCTGGTTCCCCTGCACCTCACGCTACTTCTGCTCCCGTTGCAACTTCCCCAATGTGGACCCTACCAGAA TCCCGGCTTTCCTCCCTAAGAACTCCGACACCGCCGCCGTCCTTGACTGCCTGGATCCCAAATGCAAGTGGATCTTCGGAGACGACGTCGTTTCACAGTG CCCTGTCTGCCCCAATTGTACTCAGACGGCGTGTCCTCCTTACTTCATTCAGTACTGGTCCGGGTCAACGTCGGGGGTTTTGTTGACTGAGACGCTGGAT TTTCCTGGCAAAACGGTGTCGGATTTTATCGTCGGATGTTCGATCAATTCCGCGGGAATGCCTGAGGGGATTGCTGGGTTTGGGAGAGGGAATGACTCGC TTCCTTCTCAGATTGGTGCTAAGAGATTCTCTCATTGTATGGTCTCCCACGGATTCGATGATGCTCCGGTCTCGAGCGATTTGGTTCTCAATCTTGATTC TAGGAAGAAGAAGAAGACGCCGGAGGTGAGCTACACTCCGTTCGAACAAAATCCGAACTCGTCGAACTCAGCTTTCCAGACCTATTACTACGTCCCGCTC CGGCAGATCCTCGTCGAAGGCAAGCACGTGGAGGTTCCGTACAAGTATCTGGAGCCGTCGAGATCGCCGGCCGGAAACGGAGGGACGATTGTGGACTCCG GGACGACGTTTACATACATGGAGCGGCCAGTCTACGACGCGGTGGTGGATGAGATCAAGATTCGGATGTCGAATTATACGGAGGCGAAGGTGGTCGAGGA TTTGACCGGATTGGGGCCGTGCTTTAACGTCTCCAACGGCGGAGACACGTCGGTGGTTCCTGAATTGAGCTTCAAGTTTAAAGGCGGGGCGGAGATGAAG CTTCCGACGACGAACTACTTCGTGCTGGCGGATGATGGGGTTGTTTGTTTGACGATTGTTACTGACGATGTTGGGGCCGGAAGAGTTGATCATGTCGGGC CGGCGATTATTCTGGGGAATTATCAGCAGAGAGATTATTATGTTGAGTATGATTTGGAAGCGGAGAGGTTTGGGTTTAAGCAGAAGATTTGTGCTGCCTG A
AA sequence Show only first row Show all	>Lus10029408 pacid=23139895 polypeptide=Lus10029408 locus=Lus10029408.g ID=Lus10029408.BGIv1.0 annot-version=v1.0 MASYPLLLLSFSTVFLLSTATTSGITIPLSPSTTAPSSSSATSLHQILSHLASTSVARALRLKSLSPLTTSLTAVKSPLFPRSYGGYSISLSFGTPPQTT KFVMDTGSSLVWFPCTSRYFCSRCNFPNVDPTRIPAFLPKNSDTAAVLDCLDPKCKWIFGDDVVSQCPVCPNCTQTACPPYFIQYWSGSTSGVLLTETLD FPGKTVSDFIVGCSINSAGMPEGIAGFGRGNDSLPSQIGAKRFSHCMVSHGFDDAPVSSDLVLNLDSRKKKKTPEVSYTPFEQNPNSSNSAFQTYYYVPL RQILVEGKHVEVPYKYLEPSRSPAGNGGTIVDSGTTFTYMERPVYDAVVDEIKIRMSNYTEAKVVEDLTGLGPCFNVSNGGDTSVVPELSFKFKGGAEMK LPTTNYFVLADDGVVCLTIVTDDVGAGRVDHVGPAIILGNYQQRDYYVEYDLEAERFGFKQKICAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52500			Eukaryotic aspartyl protease f...		Lus10029408 [exp]	0	1
AT3G52500			Eukaryotic aspartyl protease f...		Lus10004204 [exp]	2.8	0.8485
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10040834 [exp]	3.5	0.8020
AT3G02430			Protein of unknown function (D...		Lus10036581 [exp]	4.5	0.8571
AT2G16980			Major facilitator superfamily ...		Lus10005626 [exp]	13.4	0.7939
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10018549 [exp]	18.9	0.7418
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10006505 [exp]	19.9	0.7943
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	20.5	0.7615
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10043119 [exp]	23.1	0.7574
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10018083 [exp]	27.8	0.7975
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10015547 [exp]	34.0	0.7468

Compare expression of checked genes

Lus10029408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.