Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11550 174 / 2e-55 CASP2 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) AT5G06200 167 / 2e-52 CASP4 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) AT2G36100 166 / 4e-52 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT2G27370 125 / 1e-35 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT5G15290 118 / 2e-33 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT1G14160 105 / 3e-28 Uncharacterised protein family (UPF0497) (.1) AT1G03700 50 / 7e-08 Uncharacterised protein family (UPF0497) (.1) AT4G03540 45 / 4e-06 Uncharacterised protein family (UPF0497) (.1) AT3G06390 45 / 6e-06 Uncharacterised protein family (UPF0497) (.1) AT1G17200 42 / 6e-05 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004205 [exp] 264 / 1e-90 AT3G11550 232 / 8e-78 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10021333 [exp] 207 / 4e-68 AT3G11550 246 / 1e-83 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10017009 [exp] 206 / 3e-61 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017008 [exp] 172 / 5e-54 AT2G27370 228 / 5e-76 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Lus10021332 [exp] 167 / 3e-52 AT2G36100 229 / 1e-76 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) Lus10015375 [exp] 122 / 5e-35 AT5G15290 219 / 1e-73 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 118 / 2e-33 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 100 / 2e-26 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10036770 [exp] 51 / 3e-08 AT1G14160 119 / 2e-34 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G208800 [exp] 188 / 1e-60 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075400 [exp] 179 / 2e-57 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075300 [exp] 142 / 9e-43 AT5G06200 162 / 2e-50 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.012G032300 [exp] 123 / 2e-35 AT5G15290 207 / 1e-68 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Potri.009G160000 [exp] 120 / 1e-33 AT2G27370 146 / 2e-43 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Potri.008G088700 [exp] 97 / 3e-25 AT1G14160 163 / 3e-51 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 51 / 4e-08 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 47 / 1e-06 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.008G205000 [exp] 44 / 1e-05 AT3G06390 130 / 4e-38 Uncharacterised protein family (UPF0497) (.1) Potri.001G436400 [exp] 44 / 2e-05 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10029409 pacid=23139990 polypeptide=Lus10029409 locus=Lus10029409.g ID=Lus10029409.BGIv1.0 annot-version=v1.0 ATGTCAAAGAAAGAGTCAACGACCATCGAAGTCCCCGAATCAAGCTCGGCCGAGAAGGGGTATCATGCACCCCTAGTGGCAGCAGTGAAGCACGATGGGA AAGGTAGTACTTCAGCAAGTAGAAGCGTGGCCATATTTGACTTCATCCTGAGGATTGGAGGTGTGATCTCTGCACTTTCAGCTGCTGCTACAATGGGGAC TAGTGATGAAACCCTCCCTTTCTTCACTCAGTTCTTGCAGTTCCAAGCCAGCTATGATGATCTCCCCACTTTCCAGTTTTTCGTGATAGCAATGGCGATA GTGGGAGGATACCTAGTACTCTCCCTACCTTTCTCAATCGTCTCCATCGTTCGTCCGCACGCCGTCGCTCCCCGGTTCCTCCTCCTCGTTCTGGACATCG TGGCGCTGACTCTGAACACCGCGGCTGCTGCAGCTGCGGCGGCAATAGTGTACCTGGCCCACAACGGTAACAACAACACCAACTGGCTGGCAATCTGCCA GCAGTTCGGCGACTTCTGCCAGAAAGTGAGTGGCGCCGTTGTGGCAGCTTTCGTCACCGTTGTCGTGTTTGTGGTGCTCGTCGTCCTCTTCGCCGTTGCT CTCAGAAGGAACTGA
AA sequence Show only first row Show all	>Lus10029409 pacid=23139990 polypeptide=Lus10029409 locus=Lus10029409.g ID=Lus10029409.BGIv1.0 annot-version=v1.0 MSKKESTTIEVPESSSAEKGYHAPLVAAVKHDGKGSTSASRSVAIFDFILRIGGVISALSAAATMGTSDETLPFFTQFLQFQASYDDLPTFQFFVIAMAI VGGYLVLSLPFSIVSIVRPHAVAPRFLLLVLDIVALTLNTAAAAAAAAIVYLAHNGNNNTNWLAICQQFGDFCQKVSGAVVAAFVTVVVFVVLVVLFAVA LRRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10029409 [exp]	0	1
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	1.4	0.9768
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	1.4	0.9751
AT2G21100			Disease resistance-responsive ...		Lus10025064 [exp]	2.2	0.9547
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	2.4	0.9732
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029331 [exp]	3.0	0.9304
AT2G36100		CASP1	Casparian strip membrane domai...		Lus10021332 [exp]	3.5	0.9571
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10000318 [exp]	6.2	0.9202
					Lus10025501 [exp]	6.5	0.9337
AT1G71740			unknown protein		Lus10042773 [exp]	6.9	0.9360
AT4G34800			SAUR-like auxin-responsive pro...		Lus10012182 [exp]	6.9	0.9117

Compare expression of checked genes

Lus10029409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.