Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22380 135 / 1e-38 NAC ANAC090 NAC domain containing protein 90 (.1) AT3G44350 127 / 2e-35 NAC ANAC061 NAC domain containing protein 61 (.1.2) AT5G17260 100 / 1e-23 NAC ANAC086 NAC domain containing protein 86 (.1) AT1G26870 99 / 2e-23 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G32510 97 / 2e-23 NAC ANAC011 NAC domain containing protein 11 (.1) AT1G76420 96 / 1e-22 NAC NAC368, CUC3, ANAC031 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G65910 97 / 2e-22 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G03200 96 / 2e-22 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G39820 95 / 2e-22 NAC ANAC094 NAC domain containing protein 94 (.1) AT2G17040 93 / 5e-22 NAC ANAC036 NAC domain containing protein 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004846 [exp] 151 / 2e-44 AT5G22380 275 / 1e-93 NAC domain containing protein 90 (.1) Lus10020643 [exp] 149 / 9e-44 AT5G22380 283 / 1e-96 NAC domain containing protein 90 (.1) Lus10015367 [exp] 97 / 6e-23 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10030478 [exp] 98 / 7e-23 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10007263 [exp] 97 / 8e-23 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10042531 [exp] 96 / 2e-22 AT3G04070 303 / 4e-101 NAC domain containing protein 47 (.1.2) Lus10037156 [exp] 95 / 2e-22 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10030446 [exp] 94 / 2e-22 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10026617 [exp] 94 / 2e-22 AT1G69490 298 / 1e-101 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G209200 [exp] 172 / 1e-52 AT5G22380 241 / 3e-80 NAC domain containing protein 90 (.1) Potri.016G076100 [exp] 169 / 1e-51 AT5G22380 214 / 2e-69 NAC domain containing protein 90 (.1) Potri.016G076000 [exp] 167 / 1e-50 AT5G22380 226 / 4e-74 NAC domain containing protein 90 (.1) Potri.001G218800 [exp] 153 / 4e-45 AT5G22380 272 / 3e-92 NAC domain containing protein 90 (.1) Potri.009G019200 [exp] 146 / 1e-42 AT3G44350 257 / 1e-86 NAC domain containing protein 61 (.1.2) Potri.013G054000 [exp] 100 / 2e-24 AT3G04070 338 / 9e-115 NAC domain containing protein 47 (.1.2) Potri.017G082000 [exp] 98 / 3e-23 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.008G089000 [exp] 94 / 1e-22 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.019G031400 [exp] 96 / 2e-22 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.010G174600 [exp] 95 / 2e-22 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10029410 pacid=23139946 polypeptide=Lus10029410 locus=Lus10029410.g ID=Lus10029410.BGIv1.0 annot-version=v1.0 ATGGCTCCAAGTCCACCGGGGTTTAGATTCTACCCAACGGAGGAAGAGCTCATCTCCTTCTATCTCCACCACAAGCTCGAATCTCGAGACCAACATCACA GCGCCGAGATCGCGTTACATATCGATCGCGTCATCCCTGTCCTCGACATCTACCTCCACAATCCATGGGATCTTCCTCAACTGTCAGCAGACAGGGATAC GGCGTCGTTGGAGGAAGGGGAAGAGCAACAGTGGTTCTTTTTCAGGAGGATGAAAGAGAGGGAAGGAAGGGGAGGGAGGCCGAAGAGGGTTGCCGGGTGC GGGTATTGGAAAGCCACGGGTTCACTTGGCTACGTCTACAGCAGCAGCAGCAGCAGTAGTCGTAGTGATCATCAACGTCGAAGTTGCATTGGGGAGAAAA GGACGATGGTGTTCTACAAAGGCAAAGCCCCCAGAGGCCGCAAAACCCATTGGAAGATTCACGAGTACAAGGCCTTCATCAATCCCCAGCATCAACAATC TCCATCGAATCTCACGTTGAGGCACGAGTACAGTTTGATTCGGTTGTACAAGAAGTCCAGATGCTTGAGATCATTCGACAGAAGGCCCGTTGGGATATTT CAGCTGCAACCCAATATTAGTACTAGTACCACCACTACTACAACAAGTACTAGTACTGCTCATAGTCATACCAATCATCAACTACTAAATATAACTACGA CATCAACACCAGATCAACAAGCTGACGGCGATGATGCTGCTGCTACTATGATGCCGGCTGATAATCATCGTCATCCTCGTCAACCTTCGGGATTCTGGGG TTACTTGCAGGACCTTGACAAGCATTTCAATGGAGATACATGA
AA sequence Show only first row Show all	>Lus10029410 pacid=23139946 polypeptide=Lus10029410 locus=Lus10029410.g ID=Lus10029410.BGIv1.0 annot-version=v1.0 MAPSPPGFRFYPTEEELISFYLHHKLESRDQHHSAEIALHIDRVIPVLDIYLHNPWDLPQLSADRDTASLEEGEEQQWFFFRRMKEREGRGGRPKRVAGC GYWKATGSLGYVYSSSSSSSRSDHQRRSCIGEKRTMVFYKGKAPRGRKTHWKIHEYKAFINPQHQQSPSNLTLRHEYSLIRLYKKSRCLRSFDRRPVGIF QLQPNISTSTTTTTTSTSTAHSHTNHQLLNITTTSTPDQQADGDDAAATMMPADNHRHPRQPSGFWGYLQDLDKHFNGDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10029410 [exp]	0	1
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10024671 [exp]	6.3	0.7363
					Lus10024506 [exp]	25.8	0.6684
AT3G13290		VCR	varicose-related (.1)		Lus10039096 [exp]	32.9	0.6892
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10010501 [exp]	55.2	0.6649
AT2G12646			PLATZ transcription factor fam...		Lus10038103 [exp]	83.5	0.6727
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10031144 [exp]	104.7	0.6839
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10007013 [exp]	118.5	0.6507
					Lus10043467 [exp]	163.1	0.6676
					Lus10016514 [exp]	206.1	0.6350

Compare expression of checked genes

Lus10029410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.