Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15040 112 / 2e-30 Protein of unknown function, DUF584 (.1) AT4G21970 73 / 4e-16 Protein of unknown function, DUF584 (.1) AT4G04630 70 / 6e-15 Protein of unknown function, DUF584 (.1) AT1G61930 66 / 4e-13 Protein of unknown function, DUF584 (.1) AT1G11700 63 / 3e-12 Protein of unknown function, DUF584 (.1) AT3G45210 62 / 5e-12 Protein of unknown function, DUF584 (.1) AT4G21930 58 / 2e-10 Protein of unknown function, DUF584 (.1) AT5G60680 57 / 3e-10 Protein of unknown function, DUF584 (.1) AT2G28400 56 / 9e-10 Protein of unknown function, DUF584 (.1) AT2G34340 55 / 9e-10 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004207 [exp] 433 / 5e-157 AT3G15040 110 / 1e-29 Protein of unknown function, DUF584 (.1) Lus10021309 [exp] 169 / 7e-53 AT3G15040 99 / 2e-25 Protein of unknown function, DUF584 (.1) Lus10016988 [exp] 154 / 8e-47 AT3G15040 87 / 8e-21 Protein of unknown function, DUF584 (.1) Lus10034190 [exp] 84 / 9e-20 AT3G15040 125 / 9e-36 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 70 / 1e-15 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 71 / 1e-14 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 69 / 1e-14 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10019936 [exp] 62 / 8e-12 AT5G03230 99 / 1e-26 Protein of unknown function, DUF584 (.1) Lus10020043 [exp] 62 / 1e-11 AT4G21970 127 / 1e-37 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076300 [exp] 135 / 2e-39 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.006G209500 [exp] 96 / 7e-24 AT3G15040 65 / 3e-12 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 73 / 1e-15 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 69 / 3e-14 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 68 / 5e-14 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 64 / 2e-12 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 63 / 4e-12 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 61 / 1e-11 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 60 / 3e-11 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 60 / 3e-11 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10029411 pacid=23139849 polypeptide=Lus10029411 locus=Lus10029411.g ID=Lus10029411.BGIv1.0 annot-version=v1.0 ATGGACGCCGAAGCAGCCGGCCGCCGCTACCTCTCCCAGATCCCTCAATCCAGATTCTCCGTCAATGCAATCGGAGACGACGAGCTCAACGAGGACGACA TCCTCTGGACAGACGATTTCAACCCTAGCAACAACCTCATCTCCTCCTCCGCCGCCGCCAAGCAGAAGCCAAAACGCAAGGCCGGAAACCACAGGCGGAG CGTCTCATTCCAGCACACCAGCTCCGGGATCCTAGCCGCCTTACCAGAGCTCAGCAACCACCACCGCAACAAGCCGATGCTGGTCAAAACGATCCCGGCG CCGGTCCCAAGGCCAGCGGCGGAGAGGGATAGCTTCTCGTCGGATTTCTTGTCGACTCAGTCGGCTCCCGGGAGGAAACTGAAGCAATCGGCTCCGATGA AAGTGCCGGTGCTGTCGTCGATGGCGATTGCTAAGCAGAGGAGGAACAGCAGGTTTAAGGAAGAGGGGAATAGTGGATTCGACGATGAGATGATGCTGCC GCCGCATGAGATGGTGGCGAGGGAGAATTGGAGGCAGTCGTCGTATTCTCACTCGATGCTTGAAGGCGTTGGCCGGACTCTCAAAGGGAGGGATCTAAGG CAGGTCAGAAACGCTGTGTTTCGCCAAACTGGGTTCCTTGACTGA
AA sequence Show only first row Show all	>Lus10029411 pacid=23139849 polypeptide=Lus10029411 locus=Lus10029411.g ID=Lus10029411.BGIv1.0 annot-version=v1.0 MDAEAAGRRYLSQIPQSRFSVNAIGDDELNEDDILWTDDFNPSNNLISSSAAAKQKPKRKAGNHRRSVSFQHTSSGILAALPELSNHHRNKPMLVKTIPA PVPRPAAERDSFSSDFLSTQSAPGRKLKQSAPMKVPVLSSMAIAKQRRNSRFKEEGNSGFDDEMMLPPHEMVARENWRQSSYSHSMLEGVGRTLKGRDLR QVRNAVFRQTGFLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15040			Protein of unknown function, D...		Lus10029411 [exp]	0	1
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	4.4	0.9187
AT4G22560			unknown protein		Lus10028927 [exp]	7.5	0.9099
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10021127 [exp]	9.4	0.8995
					Lus10042011 [exp]	9.7	0.9064
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	10.4	0.9060
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	10.5	0.9098
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	11.3	0.9066
AT3G15040			Protein of unknown function, D...		Lus10004207 [exp]	12.6	0.8422
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025818 [exp]	13.0	0.9019
AT1G71740			unknown protein		Lus10041497 [exp]	14.8	0.8946

Compare expression of checked genes

Lus10029411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.