Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37340 56 / 4e-08 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT3G53500 54 / 9e-08 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT1G47490 47 / 4e-05 ATRBP47C RNA-binding protein 47C (.1.2) AT3G61860 46 / 5e-05 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G47500 46 / 5e-05 ATRBP47C' RNA-binding protein 47C' (.1) AT4G25500 44 / 0.0002 ATRSP40, AT-SRP40, ATRSP35, RS40, At-RS40 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) AT5G52040 44 / 0.0002 ATRSP41, RS41, At-RS41 arginine/serine-rich splicing factor 41, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G19350 44 / 0.0004 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G46610 43 / 0.0004 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G19610 44 / 0.0005 nucleotide binding;nucleic acid binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004210 [exp] 880 / 0 AT2G37340 52 / 6e-07 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Lus10016981 [exp] 321 / 5e-101 AT3G61860 50 / 3e-06 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015039 [exp] 51 / 2e-06 AT3G53500 256 / 8e-85 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10003987 [exp] 50 / 2e-06 AT3G53500 255 / 2e-84 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10038883 [exp] 49 / 5e-06 AT4G25500 206 / 7e-64 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Lus10041728 [exp] 44 / 0.0004 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10031277 [exp] 43 / 0.0005 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G205800 [exp] 220 / 5e-63 AT2G37340 52 / 6e-07 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.014G076600 [exp] 50 / 2e-06 AT4G25500 255 / 3e-84 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.002G153600 [exp] 49 / 5e-06 AT4G25500 264 / 7e-88 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.012G133600 [exp] 47 / 4e-05 AT4G25500 316 / 2e-106 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.007G028300 [exp] 46 / 6e-05 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G135800 [exp] 46 / 6e-05 AT4G25500 322 / 5e-108 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.014G101800 [exp] 45 / 6e-05 AT3G61860 319 / 9e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.018G002300 [exp] 45 / 0.0001 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10029414 pacid=23139871 polypeptide=Lus10029414 locus=Lus10029414.g ID=Lus10029414.BGIv1.0 annot-version=v1.0 ATGTCATTATACATTGGTAATCTGTCATCTCACACTCCCAAAGATGAGCTCGAACGTGTTTTCCGAAGGTTTGGACAGTGTGACATAAGGATGAAAGATG GGTATGCCTTTGTGGTGTATGAGTTTCCTCCAAATGCTGATAAAGCCCTGAAAGCACTACAGAAGAAGTACATCTGCGGGCAGCTATTAACTCTTTCATG GTCAAAGAAACAACCTAGAACATTTGACAGACATGGTAGGTCGGCTGCAAGGTACGAGTCACAACATGGTAGATATTCTTCAAAGGGTGCAGAGGATGGT CAAAAGAAGTTAAATTTGCCTGCTCAAGAAGATTATAGAATCGTTAGCGAGAATGAAGATGAGAATGAAAGAAGGGTTCCCTCTGGTATGCTTCAAGAGG GGACAGCTTATGATGACATGAAGGGTGTTTCTGGTGAAGAGCACCCCAGGCACAGGGGGGATGAAATGGAGGACAATGGTAGATGGGATCTCAAACTTGA TGACCGGCTGAATGAAAATGATGTTGATAATGGAATAGAGTTCGACAGGTATGAACCTTACCGAGACAGAAACGGCGATGATAACCCTCAATTGCATCAT TCCGGGGATAGACGTAAAGACCACACCGTTGAAGGAAATCTAAAGCGCAAGAATGCTTGTTATAGTTCTGGGGGCTTAGGTCACAAAATGTGGAACTGTC CTGAGAAAAGCTCTATCAGGAGAAAATGGTCCAAGTTTGACCAAAGGGGCGACAGCAATGTGAACGGGAAAAGGAGAAGTGAAAATGAGATGGGTCTCGA GCACACAGAGGAAGTTGAGAAGAAACGAAAAAGGGAAAGAAGCCGGTCGCCTAAAACACGTAACACTAAGAGAGGAAGAAGGTCAGTTTCATCTCGTCCT GGTTCTAGTCACAAGAGATTAAGATCAGTGCCCAAGTCCTCAAAGCATACACGTGTGTCAAATGGACACTCTAGGTCTCATTCAGCATCATCTGACTCAA GGTCTGGTTCAACATCTCATAGATTCAGAAATGCCAAGTCGAGATCAAGGTCCAACTCGCCTGCATCTTTGTCTTTGTCTGTGTCACTTGCGCAGCCTTT ACCTGCCACAAATAAGGCTCAGTTGGGTCGGGAAGGTTCACTGGACACTGTTAACGCCGCAGACTCCAGAGACATTGTGGTTGAGAAGGACCTAGCAGTG GAAATTAATACAAGGGCTGAAGATTCTGGACTTGCAAATGAAGTAACTCTAGCAAATTCCACTTTATCTTTGGATTTAGAATGCGAAGTTGGTAAAGGGG AGCTACCGATCATGGACAACAGAGAAAATTTGTCTGCACCACTCAATGATGTGATGGATCCTAGCACATCCCTCACGAAGAAAGGTACAGTTGTTGCGAT GAGCTCTTCACCCAAAAGGCTGATGGGGATAGCTTTGGAATATTCAGGCCCAGCCATAGCAGAGAATGTGGCATGTTCTTTTATGAAACCAGAGGCTGAA CTGTTAGTTATTTCAGGCACCTCCAAATCGACTGATGTTTCCCCCGAAGAGTTATGTTTGGTTCTAAAGCACTATGGCCTTGATCTTCCAGATAAAGATG AAATGCATTTAAACCCAGATGCTTACTTTGGTTCTGCTCGCTTTTGGCCTTGGGAAACCATCTATTACAGGAGATTGAAGAAAGGTCCTATATCCATTGA AAACTATGCGAGGCGCATGGAGCAAAATCATAAATTTGGTATCGTTGACAAGTACGTTAGAAGCAGTAGTGGATGGGTAGAACTGGACCAAGGGAAGGTG TAG
AA sequence Show only first row Show all	>Lus10029414 pacid=23139871 polypeptide=Lus10029414 locus=Lus10029414.g ID=Lus10029414.BGIv1.0 annot-version=v1.0 MSLYIGNLSSHTPKDELERVFRRFGQCDIRMKDGYAFVVYEFPPNADKALKALQKKYICGQLLTLSWSKKQPRTFDRHGRSAARYESQHGRYSSKGAEDG QKKLNLPAQEDYRIVSENEDENERRVPSGMLQEGTAYDDMKGVSGEEHPRHRGDEMEDNGRWDLKLDDRLNENDVDNGIEFDRYEPYRDRNGDDNPQLHH SGDRRKDHTVEGNLKRKNACYSSGGLGHKMWNCPEKSSIRRKWSKFDQRGDSNVNGKRRSENEMGLEHTEEVEKKRKRERSRSPKTRNTKRGRRSVSSRP GSSHKRLRSVPKSSKHTRVSNGHSRSHSASSDSRSGSTSHRFRNAKSRSRSNSPASLSLSVSLAQPLPATNKAQLGREGSLDTVNAADSRDIVVEKDLAV EINTRAEDSGLANEVTLANSTLSLDLECEVGKGELPIMDNRENLSAPLNDVMDPSTSLTKKGTVVAMSSSPKRLMGIALEYSGPAIAENVACSFMKPEAE LLVISGTSKSTDVSPEELCLVLKHYGLDLPDKDEMHLNPDAYFGSARFWPWETIYYRRLKKGPISIENYARRMEQNHKFGIVDKYVRSSSGWVELDQGKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Lus10029414 [exp]	0	1
AT4G02720			unknown protein		Lus10022052 [exp]	2.4	0.8663
AT1G71350			eukaryotic translation initiat...		Lus10034314 [exp]	3.2	0.8146
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	3.7	0.8384
AT2G44530			Phosphoribosyltransferase fami...		Lus10012074 [exp]	4.0	0.8269
AT1G12530			unknown protein		Lus10007047 [exp]	5.7	0.8103
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10020775 [exp]	6.2	0.8331
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	10.7	0.7802
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10014552 [exp]	12.7	0.8124
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10040648 [exp]	15.6	0.7765
AT2G20330			Transducin/WD40 repeat-like su...		Lus10022855 [exp]	15.7	0.7471

Compare expression of checked genes

Lus10029414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.