Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52560 277 / 1e-97 MMZ4 ,UEV1D ,UEV1D-4 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) AT2G36060 273 / 5e-96 MMZ3 ,UEV1C UBIQUITIN E2 VARIANT 1C, MMS ZWEI homologue 3 (.1.2.3) AT1G23260 221 / 4e-75 MMZ1 ,UEV1A UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) AT1G70660 217 / 1e-73 MMZ2 ,UEV1B UBIQUITIN E2 VARIANT 1B, MMS ZWEI homologue 2 (.1.2) AT1G70650 213 / 4e-67 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT5G25760 52 / 6e-09 PEX4, UBC21 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) AT1G14400 48 / 1e-07 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT2G02760 48 / 1e-07 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT3G13550 48 / 2e-07 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) AT1G50490 47 / 7e-07 UBC20 ubiquitin-conjugating enzyme 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004211 [exp] 272 / 2e-95 AT2G36060 273 / 8e-96 UBIQUITIN E2 VARIANT 1C, MMS ZWEI homologue 3 (.1.2.3) Lus10034611 [exp] 225 / 1e-76 AT1G23260 266 / 1e-92 UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) Lus10021797 [exp] 224 / 4e-76 AT1G23260 268 / 3e-93 UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) Lus10007126 [exp] 51 / 3e-08 AT3G08690 148 / 4e-46 ubiquitin-conjugating enzyme 11 (.1.2) Lus10016670 [exp] 51 / 3e-08 AT5G56150 149 / 1e-46 ubiquitin-conjugating enzyme 30 (.1.2) Lus10009495 [exp] 51 / 5e-08 AT5G25760 273 / 1e-93 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Lus10036727 [exp] 48 / 3e-07 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10037203 [exp] 48 / 3e-07 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10030786 [exp] 47 / 4e-07 AT2G02760 305 / 2e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G205700 [exp] 285 / 1e-100 AT3G52560 275 / 7e-97 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) Potri.016G073100 [exp] 281 / 4e-99 AT3G52560 281 / 5e-99 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) Potri.010G107700 [exp] 234 / 2e-80 AT1G23260 269 / 5e-94 UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) Potri.008G133900 [exp] 229 / 1e-78 AT1G23260 258 / 1e-89 UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) Potri.009G049600 [exp] 51 / 1e-08 AT3G20060 296 / 3e-104 ubiquitin-conjugating enzyme19 (.1.2) Potri.006G240900 [exp] 51 / 2e-08 AT5G25760 315 / 2e-112 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Potri.018G039200 [exp] 51 / 2e-08 AT5G25760 314 / 5e-112 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Potri.001G254500 [exp] 50 / 4e-08 AT3G20060 295 / 1e-103 ubiquitin-conjugating enzyme19 (.1.2) Potri.015G064000 [exp] 48 / 1e-07 AT2G02760 284 / 3e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.013G064400 [exp] 47 / 3e-07 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10029415 pacid=23139914 polypeptide=Lus10029415 locus=Lus10029415.g ID=Lus10029415.BGIv1.0 annot-version=v1.0 ATGACGCTCGGCTCAGGAGGATCGAGTTGTGTCGTGCCTCGCAACTTTAGATTGTTGGAAGAGCTTGAACGTGGGGAGAAGGGCATTGGAGATGGCACTG TAAGCTATGGAATGGATGATGGAGATGACATTTACATGCGCTCGTGGACCGGCACAATAATCGGTCCTCACAATACGGTACATGAAGGTCGGATTTATCA ATTGAAGCTGTTCTGCGATAAAGATTACCCTGAGAAGCCACCGAGTGTTCGTTTTCATTCACGAGTCAACATGACTTGTGTGAATCACGAAACTGGAGTG GTTGAACCAAAGAAGTTCGGACTGCTCTCAAATTGGCAGCGAGAGTACACGATGGAAGACATATTGACACAGCTGAAGAAGGAGATGGCAGCTGCACACA ACCGAAAGCTTGTCCAACCTCCAGAGGGAACCTACTTCTAG
AA sequence Show only first row Show all	>Lus10029415 pacid=23139914 polypeptide=Lus10029415 locus=Lus10029415.g ID=Lus10029415.BGIv1.0 annot-version=v1.0 MTLGSGGSSCVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGV VEPKKFGLLSNWQREYTMEDILTQLKKEMAAAHNRKLVQPPEGTYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52560		MMZ4 ,UEV1D ,UE...	MMS2 ZWEI HOMOLOGUE 4, ubiquit...		Lus10029415 [exp]	0	1
AT2G36060		MMZ3 ,UEV1C	UBIQUITIN E2 VARIANT 1C, MMS Z...		Lus10004211 [exp]	1.0	0.8754
AT2G42780			unknown protein		Lus10010947 [exp]	1.7	0.8522
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10019047 [exp]	3.5	0.8735
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10041427 [exp]	4.8	0.7906
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10025319 [exp]	5.5	0.8335
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10039114 [exp]	6.9	0.8057
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10028820 [exp]	7.5	0.8311
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10020746 [exp]	7.7	0.8139
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	8.1	0.8357
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10022776 [exp]	10.5	0.8259

Compare expression of checked genes

Lus10029415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.