Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36020 179 / 4e-56 HVA22J HVA22-like protein J (.1) AT5G42560 177 / 5e-55 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) AT1G75700 161 / 4e-50 HVA22G HVA22-like protein G (.1) AT1G19950 156 / 1e-46 HVA22H HVA22-like protein H (ATHVA22H) (.1) AT4G36720 61 / 2e-11 HVA22K HVA22-like protein K (.1) AT2G42820 56 / 9e-10 HVA22F HVA22-like protein F (.1) AT5G50720 48 / 3e-07 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) AT4G24960 48 / 4e-07 ATHVA22D ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22 homologue D (.1.2.3) AT5G62490 46 / 4e-06 ATHVA22B ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) AT1G74520 44 / 3e-05 ATHVA22A HVA22 homologue A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016974 [exp] 306 / 1e-106 AT2G36020 210 / 2e-68 HVA22-like protein J (.1) Lus10021299 [exp] 303 / 2e-105 AT2G36020 206 / 6e-67 HVA22-like protein J (.1) Lus10004215 [exp] 293 / 2e-102 AT2G36020 196 / 6e-64 HVA22-like protein J (.1) Lus10034519 [exp] 177 / 1e-54 AT5G42560 324 / 2e-111 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10033152 [exp] 177 / 1e-54 AT5G42560 328 / 7e-113 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10024332 [exp] 176 / 3e-54 AT5G42560 330 / 9e-114 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10007215 [exp] 58 / 3e-10 AT4G36720 196 / 2e-64 HVA22-like protein K (.1) Lus10010093 [exp] 58 / 4e-10 AT4G36720 202 / 2e-66 HVA22-like protein K (.1) Lus10032557 [exp] 52 / 2e-08 AT5G50720 172 / 8e-57 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G205300 [exp] 212 / 4e-69 AT2G36020 228 / 1e-74 HVA22-like protein J (.1) Potri.016G072600 [exp] 206 / 2e-67 AT2G36020 210 / 9e-69 HVA22-like protein J (.1) Potri.005G237900 [exp] 182 / 5e-57 AT5G42560 274 / 1e-91 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Potri.002G023500 [exp] 178 / 3e-55 AT5G42560 296 / 2e-100 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Potri.004G166800 [exp] 171 / 4e-53 AT1G75700 234 / 3e-78 HVA22-like protein G (.1) Potri.007G029300 [exp] 64 / 4e-12 AT4G36720 252 / 2e-85 HVA22-like protein K (.1) Potri.009G113400 [exp] 61 / 3e-11 AT4G36720 241 / 1e-81 HVA22-like protein K (.1) Potri.014G148600 [exp] 49 / 2e-07 AT5G62490 87 / 1e-22 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) Potri.015G062800 [exp] 47 / 1e-06 AT1G74520 255 / 4e-88 HVA22 homologue A (.1) Potri.012G101600 [exp] 47 / 1e-06 AT5G50720 133 / 3e-41 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03134 [flax] [poplar] TB2_DP1_HVA22 TB2/DP1, HVA22 family
Representative CDS sequence Show only first row Show all	>Lus10029419 pacid=23139940 polypeptide=Lus10029419 locus=Lus10029419.g ID=Lus10029419.BGIv1.0 annot-version=v1.0 ATGCTGGGAGATTTCTTGAACAGATTGCTCCTGCTGTTTTTCGGGTATGCTTACCCGGCATTCGAATGCTTCAAGGTTGCAGAGAGGAACAAGATCAACA TCGAGGATATCCGGTTCTGGTGCCACTATTGGATTATTGTCGCGCTGATCATAGTTTGTGAAAGATTCGTCGACATTTTCTTGTGGTGGTTGCCGTTCTA CGGTGAGGCCAAGTTGGGATTCTTCATCTGGTTGTGGTATCCAAAGACCAGGGGGACTTGCTTCATGTTCAACAACTTCGTGAGGCCGTACGTTTCGAAA CACGAAACCGACATCGACCAGAAGTTGATGGAAGTGAAGGCCAGAGTTTGGGACTTCGCAATTCACTACTGGCAGAATTGCGCCAAGTTGGGTCAGTCCA CTTTCTTCCAGGTTCTTGAGCAGTTGGCTACTCAGTCCGGTCGGTTTGGCAATGTCAACACTAAGCCTCAGAAGAAAACAGGCAGCACGGTACCGATGGC GCCGCCGCCGCCGGAGTCACCGACGGCGAGGAGGAGCGACAGCGGGAGGTGGACGCCGCGAGCGACCAGTAGGCTGAACAGGCAGTCATCAGCAGTCGAT TCGCCGAGAGGACCGATGGACGGCGACAATGACGAGCTTAACCAGGCAAAGCTCCGGCTCCGGCGATCGGCACAGGTGTCCTAA
AA sequence Show only first row Show all	>Lus10029419 pacid=23139940 polypeptide=Lus10029419 locus=Lus10029419.g ID=Lus10029419.BGIv1.0 annot-version=v1.0 MLGDFLNRLLLLFFGYAYPAFECFKVAERNKINIEDIRFWCHYWIIVALIIVCERFVDIFLWWLPFYGEAKLGFFIWLWYPKTRGTCFMFNNFVRPYVSK HETDIDQKLMEVKARVWDFAIHYWQNCAKLGQSTFFQVLEQLATQSGRFGNVNTKPQKKTGSTVPMAPPPPESPTARRSDSGRWTPRATSRLNRQSSAVD SPRGPMDGDNDELNQAKLRLRRSAQVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10029419 [exp]	0	1
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032498 [exp]	10.4	0.6672
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10018527 [exp]	23.4	0.6536
AT1G50650			Stigma-specific Stig1 family p...		Lus10000696 [exp]	30.0	0.6502
AT5G62040		BFT	brother of FT and TFL1, PEBP (...		Lus10027442 [exp]	41.1	0.6485
					Lus10030536 [exp]	46.0	0.6228
AT4G14480			Protein kinase superfamily pro...		Lus10021882 [exp]	49.4	0.6406
AT1G55365			unknown protein		Lus10010316 [exp]	54.2	0.6251
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10042155 [exp]	59.1	0.6355
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10024938 [exp]	63.0	0.5713
AT3G51760			Protein of unknown function (D...		Lus10022661 [exp]	74.6	0.6067

Compare expression of checked genes

Lus10029419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.