Plant FIBer expression Database

Lus10029420 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06280 48 / 1e-07 unknown protein
AT3G52520 44 / 3e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004216
[exp]
199 / 7e-67 AT3G52520 71 / 3e-16 unknown protein
Lus10016973
[exp]
94 / 4e-25 AT5G06280 68 / 7e-15 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G072500
[exp]
82 / 2e-20 AT5G06280 61 / 4e-12 unknown protein
Potri.006G205200
[exp]
74 / 3e-17 AT5G06280 52 / 5e-09 unknown protein
Potri.004G178101
[exp]
39 / 0.0003 ND /
PFAM info
Representative CDS sequence
>Lus10029420 pacid=23139870 polypeptide=Lus10029420 locus=Lus10029420.g ID=Lus10029420.BGIv1.0 annot-version=v1.0
ATGGAACAGCCGGATCCCCTCCGCCGCCGGACCTCCATCTCCACCGCCGTCAACATACCCACCATCGACACTTCTGACGTCGAGCTGTACTCCTTCACCA
AATCAACGCCAGGGCCGCCACAACAACAGTTTTCATCTTCTTCTTCCTACACTTCCATCAAGGACCTCCTCCCTTCCGCCGCCGTCAACTCACCCACCGC
CGCCGTCGCCGCCGGAGGCGTCGGCGGATTCTCCTACGAAATCTCCATCCGCAACCGTCTCGTAAAGCAAGCAGCCTGGGCTTACCTCCAGCCCATGTCC
GCCTCTCCTGGCTCCTCCGGCCACCACTTCCTCCACCGCCTCTGGATCAAATTCGCATCTCTCCGCCACCCCGTCATCCGATTCTTCCGATTCCGTCTCG
TCCCTGCCGTCTCTCAATTCTTCCTCTCAATCTGGGCTTAG
AA sequence
>Lus10029420 pacid=23139870 polypeptide=Lus10029420 locus=Lus10029420.g ID=Lus10029420.BGIv1.0 annot-version=v1.0
MEQPDPLRRRTSISTAVNIPTIDTSDVELYSFTKSTPGPPQQQFSSSSSYTSIKDLLPSAAVNSPTAAVAAGGVGGFSYEISIRNRLVKQAAWAYLQPMS
ASPGSSGHHFLHRLWIKFASLRHPVIRFFRFRLVPAVSQFFLSIWA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G52520 unknown protein Lus10029420
[exp]
0 1
AT4G09350 NdhT, CRRJ NADH dehydrogenase-like comple... Lus10029740
[exp]
4.7 0.9191
AT1G79510 Uncharacterized conserved prot... Lus10001766
[exp]
7.2 0.9102
AT5G52420 unknown protein Lus10027493
[exp]
7.5 0.8918
AT1G72030 Acyl-CoA N-acyltransferases (N... Lus10021995
[exp]
7.7 0.9038
AT1G79510 Uncharacterized conserved prot... Lus10009597
[exp]
7.7 0.9087
AT1G68660 Ribosomal protein L12/ ATP-dep... Lus10034292
[exp]
13.0 0.8789
AT3G12685 Acid phosphatase/vanadium-depe... Lus10001756
[exp]
14.0 0.8620
AT4G09350 NdhT, CRRJ NADH dehydrogenase-like comple... Lus10042771
[exp]
14.5 0.8950
AT4G27360 Dynein light chain type 1 fami... Lus10038566
[exp]
14.9 0.8767
AT5G67370 Protein of unknown function (D... Lus10011087
[exp]
14.9 0.8940

Lus10029420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.