Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36010 437 / 7e-150 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1.2.3) AT5G22220 370 / 4e-124 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2.3) AT1G47870 230 / 2e-70 E2F_DP ATE2FC, ATE2F2, E2FC ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) AT5G14960 59 / 3e-09 E2F_DP DEL2, E2L1, E2FD DP-E2F-like 2 (.1) AT3G48160 57 / 1e-08 E2F_DP E2FE, E2L3, DEL1 E2F-LIKE 3, DP-E2F-like 1 (.1.2) AT3G01330 57 / 1e-08 E2F_DP E2FF, E2L2, DEL3 E2F-LIKE 2, DP-E2F-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004217 [exp] 757 / 0 AT2G36010 456 / 4e-158 E2F transcription factor 3 (.1.2.3) Lus10016972 [exp] 617 / 0 AT2G36010 446 / 4e-154 E2F transcription factor 3 (.1.2.3) Lus10021298 [exp] 592 / 0 AT2G36010 436 / 2e-149 E2F transcription factor 3 (.1.2.3) Lus10005209 [exp] 379 / 1e-128 AT5G22220 421 / 4e-146 E2F transcription factor 1 (.2.3) Lus10013321 [exp] 338 / 6e-112 AT5G22220 351 / 2e-117 E2F transcription factor 1 (.2.3) Lus10033151 [exp] 233 / 2e-71 AT1G47870 275 / 3e-89 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Lus10032439 [exp] 59 / 6e-09 AT3G48160 366 / 1e-124 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10042941 [exp] 58 / 8e-09 AT3G48160 371 / 1e-126 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10039455 [exp] 50 / 2e-06 AT3G01330 299 / 2e-97 E2F-LIKE 2, DP-E2F-like protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G205100 [exp] 498 / 4e-174 AT2G36010 435 / 7e-150 E2F transcription factor 3 (.1.2.3) Potri.016G072300 [exp] 485 / 3e-169 AT2G36010 452 / 6e-157 E2F transcription factor 3 (.1.2.3) Potri.004G200800 [exp] 418 / 2e-142 AT5G22220 457 / 1e-158 E2F transcription factor 1 (.2.3) Potri.009G161900 [exp] 413 / 2e-140 AT5G22220 422 / 7e-145 E2F transcription factor 1 (.2.3) Potri.002G023400 [exp] 226 / 2e-68 AT1G47870 274 / 1e-88 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Potri.015G070300 [exp] 62 / 4e-10 AT3G48160 383 / 9e-132 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.012G075300 [exp] 61 / 6e-10 AT3G48160 355 / 2e-120 E2F-LIKE 3, DP-E2F-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02319 [flax] [poplar] E2F_TDP E2F/DP family winged-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10029421 pacid=23139784 polypeptide=Lus10029421 locus=Lus10029421.g ID=Lus10029421.BGIv1.0 annot-version=v1.0 ATGTCCGGCGGTTCACCGGCGGCCTCCTCATCCCCGCAGCCTCCCCCACCTGCAGTCACCTCCGCGCCGTCATCATCGGGACCGATTCCCCCTCCTATGA GGCGCCACCTCGCCTTCGTCTCGATGAAGCCGCCGTTCGTTGCTCCCGATGATTACCACAGGTTCTCCACTCCTCCCGCTAGCTCTAAAGTCGCCGATCG GGATGCGGAGGCTATCGTCGTGAGATCTCCCGCTTTCAAACGGAAGCTCAAGCTAGACGATAGCGGAATTGATTCTACCAAGTGGACTACCAATACGGGA CACACTGATCCATCCAACAGTCCTTTTCAGACACCGACGAAAGGGGGAAGAACGTACAAGCCTAAGTCTACTAAGGCCAATAAGGCTCTTCCTCAGACAC CAGTGTCAAATCCTGGCTCCCCATCTACACTTACTCCTGCTGGCACTCGATATGACAGTTCCTTAGGGCTTCTAACAAAGAAGTTTGTCAATCTTATTAA GGTTGCAGAAGATGGTATTATTGACCTAAACAAGGCTGCAGAAACCTTGGAGGTGCAAAAAAGGCGTATCTATGACATTACAAATGTCTTGGAGGGAACT GGTCTAATTGAGAAGACACTTAAGAATAGAATACGATGGAAGGGTGTTGGTGGTTCTGATTCAGGAAATGTTGATGGTAATGCCTCTTTATTACAGGCAG AAATCGAGAGGCTGTCCCTGGAAGAGCAAAATTTAGACAATCAAATAAGAGAAATGTCGGAAAGACTGAGAAATTTAAGTGAAGATGAAAACAACCAAAA GTGGCTTTTCGTAACGGAAGACGATGTTAAGAATCTTCCTTGCTTTCAGAATCAAACCCTCATTGCCATTAAAGCTCCCCACGGGACAACTTTGGAAGTT CCCGATCCCGACGAAGCTGTTGATTATGCACAGAGAAGATACAGGATAGTTCTTAGAAGTACAATGGGTCCTATTGATGTATATCTTGTGAGCCAATTTG AGGAAAATTTCGAGGAGGCAATTGACACTGGGCCCTCAACCAGTGTTGCTCATGCTTCTAGCTCAAGTTCAAGCGTAAACCCACAGGTGGAGATGGTTTC TACTCAAGGAACCCAGAATGCAGTAGAACCTCAACTTCAACCACCAATCCAAGATGATCAACATATGTTCTCTGACTTCAATTCTACGCAGGAGTTTGTT GGAGGAATGATGAAGATTGTTCCTTCGGATGCGGATAATGAAACAGATTATTGGCTTCTTTCAGATGCTGCTGATATTAGCATTACAGACATGTGGAAGG CAGATGGTATGCTTGCAGATTTTTATCCTTCCCCGTCAACTCCTCCTCGAAATGTAAGTCCCACACAGCTCACTCAGTCGCTCGGGGGGCATTTCAACCT TGCATTGCATAGTTTTTTACTGTTGCTCCAACTAATGTTAATTGGGTGGCTGAACATGAATATGCTTCAGGTTGACTTCGAAATAGCCGATGTACAAACT CCAAGGCCAACATGA
AA sequence Show only first row Show all	>Lus10029421 pacid=23139784 polypeptide=Lus10029421 locus=Lus10029421.g ID=Lus10029421.BGIv1.0 annot-version=v1.0 MSGGSPAASSSPQPPPPAVTSAPSSSGPIPPPMRRHLAFVSMKPPFVAPDDYHRFSTPPASSKVADRDAEAIVVRSPAFKRKLKLDDSGIDSTKWTTNTG HTDPSNSPFQTPTKGGRTYKPKSTKANKALPQTPVSNPGSPSTLTPAGTRYDSSLGLLTKKFVNLIKVAEDGIIDLNKAAETLEVQKRRIYDITNVLEGT GLIEKTLKNRIRWKGVGGSDSGNVDGNASLLQAEIERLSLEEQNLDNQIREMSERLRNLSEDENNQKWLFVTEDDVKNLPCFQNQTLIAIKAPHGTTLEV PDPDEAVDYAQRRYRIVLRSTMGPIDVYLVSQFEENFEEAIDTGPSTSVAHASSSSSSVNPQVEMVSTQGTQNAVEPQLQPPIQDDQHMFSDFNSTQEFV GGMMKIVPSDADNETDYWLLSDAADISITDMWKADGMLADFYPSPSTPPRNVSPTQLTQSLGGHFNLALHSFLLLLQLMLIGWLNMNMLQVDFEIADVQT PRPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10029421 [exp]	0	1
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10004217 [exp]	1.0	0.8953
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10002325 [exp]	5.8	0.8920
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10011627 [exp]	11.3	0.8431
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10012719 [exp]	20.5	0.8312
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	20.9	0.8880
AT3G14890			phosphoesterase (.1.2)		Lus10037922 [exp]	24.7	0.8064
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	27.6	0.8801
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10030045 [exp]	28.8	0.8635
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	30.3	0.8798
AT1G57800		ORTH3, VIM5	VARIANT IN METHYLATION 5, ORTH...		Lus10038731 [exp]	31.4	0.8758

Compare expression of checked genes

Lus10029421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.