Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44120 420 / 6e-151 Ribosomal protein L30/L7 family protein (.1.2) AT3G13580 419 / 2e-150 Ribosomal protein L30/L7 family protein (.1.2.3) AT2G01250 416 / 3e-149 Ribosomal protein L30/L7 family protein (.1.2) AT1G80750 191 / 1e-60 Ribosomal protein L30/L7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004220 [exp] 489 / 2e-178 AT2G44120 421 / 4e-151 Ribosomal protein L30/L7 family protein (.1.2) Lus10021296 [exp] 475 / 9e-173 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10016970 [exp] 475 / 9e-173 AT3G13580 425 / 5e-153 Ribosomal protein L30/L7 family protein (.1.2.3) Lus10019603 [exp] 231 / 3e-76 AT1G80750 269 / 5e-91 Ribosomal protein L30/L7 family protein (.1) Lus10040040 [exp] 230 / 8e-76 AT1G80750 269 / 4e-91 Ribosomal protein L30/L7 family protein (.1) Lus10003176 [exp] 73 / 1e-14 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G073200 [exp] 415 / 6e-149 AT2G44120 363 / 2e-128 Ribosomal protein L30/L7 family protein (.1.2) Potri.008G008000 [exp] 413 / 3e-148 AT3G13580 410 / 7e-147 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.010G250900 [exp] 409 / 2e-146 AT3G13580 414 / 2e-148 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.018G140300 [exp] 397 / 5e-142 AT3G13580 359 / 8e-127 Ribosomal protein L30/L7 family protein (.1.2.3) Potri.001G047400 [exp] 236 / 3e-78 AT1G80750 285 / 2e-97 Ribosomal protein L30/L7 family protein (.1) Potri.003G180700 [exp] 231 / 2e-76 AT1G80750 280 / 1e-95 Ribosomal protein L30/L7 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00327 [flax] [poplar] Ribosomal_L30 Ribosomal protein L30p/L7e PF08079 [flax] [poplar] Ribosomal_L30_N Ribosomal L30 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10029423 pacid=23139861 polypeptide=Lus10029423 locus=Lus10029423.g ID=Lus10029423.BGIv1.0 annot-version=v1.0 ATGGCCGAAGTAGCTAAGGCAGCCGCCATTGTTCCCGAGTCCGTATTGAAGAAGAGGAAGAGAAATGAGGAGTGGGCATTGGCAAAGACCGAGGCCACTC TTGCTCAGAAGAAGAAGAATTCCGAGAACAGGAAGATCATCTTCAAGAGGGCTGAGCAGTACGCCAAGGATTACAGTGAGCAGGAAAGGGAGTTGATCAG GTTGAAAAGAGAGGCTAAGCTGAAGGGTGGTTTCTATGTCAGCCCAGAAGCCAAATTGCTCTTCATCGTCCGTATCCGTGGTATCAACGCTGTTGACCCA AAAACCAAGAAGATTTTGCAGCTGCTCCGTCTGAGACAGATCTTCAATGGAGTGTTCCTTAAGGTCAACAAGGCCACAGTCAACATGCTGCGCAGGGTTG AGCCATATGTGACCTATGGTTACCCTAATCTGAAGAGCGTGAAGGAACTAATCTACAAGAGGGGTTTCGGAAAGCTTGACAAGCAGAGAATTCCCTTGAC CGAGAATGCCATTGTTGAGAAGGGCCTTGGAAAGTTCGGCATCATCTGTGTCGAAGACTTGATCCACGAGATCATGACCGTCGGCCCTCACTTCAAGGAA GCGAATAACTTCCTATGGCCATTCAAGCTCAGCGCTCCTTTGGGTGGGTTGAAGAAGAAGAGAAACCACTATGTGGAAGGTGGTGATGCCGGAAACCGTG AGGACTTCATCAACGCCCTCATCAGGAGAATGAACTAA
AA sequence Show only first row Show all	>Lus10029423 pacid=23139861 polypeptide=Lus10029423 locus=Lus10029423.g ID=Lus10029423.BGIv1.0 annot-version=v1.0 MAEVAKAAAIVPESVLKKRKRNEEWALAKTEATLAQKKKNSENRKIIFKRAEQYAKDYSEQERELIRLKREAKLKGGFYVSPEAKLLFIVRIRGINAVDP KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLDKQRIPLTENAIVEKGLGKFGIICVEDLIHEIMTVGPHFKE ANNFLWPFKLSAPLGGLKKKRNHYVEGGDAGNREDFINALIRRMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10029423 [exp]	0	1
AT1G26880			Ribosomal protein L34e superfa...		Lus10030477 [exp]	1.7	0.9734
AT5G28060			Ribosomal protein S24e family ...		Lus10000938 [exp]	3.2	0.9615
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10012839 [exp]	3.5	0.9668
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10028965 [exp]	3.5	0.9697
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10021907 [exp]	3.6	0.9514
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	3.7	0.9727
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10026664 [exp]	4.9	0.9592
AT1G26880			Ribosomal protein L34e superfa...		Lus10012829 [exp]	4.9	0.9612
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023427 [exp]	7.1	0.9146
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	7.5	0.9607

Compare expression of checked genes

Lus10029423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.