Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49030 53 / 5e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT5G60610 52 / 1e-08 F-box/RNI-like superfamily protein (.1) AT3G52670 52 / 2e-08 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT4G00315 52 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02920 52 / 2e-08 F-box/RNI-like superfamily protein (.1) AT5G56810 51 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G10400 50 / 7e-08 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT4G00160 50 / 8e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02910 50 / 8e-08 F-box/RNI-like superfamily protein (.1.2) AT1G55660 50 / 1e-07 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014161 [exp] 122 / 6e-34 AT5G53840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029433 [exp] 117 / 3e-32 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1) Lus10035564 [exp] 107 / 8e-29 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10006513 [exp] 89 / 9e-22 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 88 / 6e-21 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10008295 [exp] 79 / 3e-19 AT1G78840 67 / 2e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10023567 [exp] 77 / 3e-18 AT4G03220 59 / 3e-10 Protein with RNI-like/FBD-like domains (.1) Lus10024702 [exp] 79 / 4e-18 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10027244 [exp] 79 / 7e-18 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011200 [exp] 58 / 1e-10 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 54 / 3e-09 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 53 / 6e-09 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104100 [exp] 51 / 4e-08 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 50 / 8e-08 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G104300 [exp] 50 / 1e-07 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 49 / 1e-07 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024300 [exp] 48 / 4e-07 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.001G395000 [exp] 47 / 8e-07 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.011G024200 [exp] 44 / 9e-06 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029424 pacid=23139805 polypeptide=Lus10029424 locus=Lus10029424.g ID=Lus10029424.BGIv1.0 annot-version=v1.0 ATGATGATTCAAGACACAAGAACTGATGATAGACTGAGTGCTATCGGTGACGATATTTTGCATCACATTCTATCCTTCCTCGACACTAAATGTTTTTTTC GAACCAGCATTCTGTCTAAGAGGTGGACATCCGTATGGAAATATGTCCATGTTCTCACTTTCGATCGGAGATCCTACATCATCTCTGAATTGACTTTCGA AGAGCATGTGGACCGAGTTCTATCCCTCCGTTCTGATAGTAGTAGCCTTAGCAAGGTTGCAGTCAACTTGTCGGCAACGCTCCCAGGGAGGATGCATGTG TTGGAGAGGGTCGCTAAATACGCTGCTTCCCATGACGTTCAAGAGCTATTCATTAGTATTTTCAATCGCAAAATTTCGGATCTCCTCGGATCATTATACC TTGTCTTCAGTCCCTGA
AA sequence Show only first row Show all	>Lus10029424 pacid=23139805 polypeptide=Lus10029424 locus=Lus10029424.g ID=Lus10029424.BGIv1.0 annot-version=v1.0 MMIQDTRTDDRLSAIGDDILHHILSFLDTKCFFRTSILSKRWTSVWKYVHVLTFDRRSYIISELTFEEHVDRVLSLRSDSSSLSKVAVNLSATLPGRMHV LERVAKYAASHDVQELFISIFNRKISDLLGSLYLVFSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49030			FBD, F-box and Leucine Rich Re...		Lus10029424 [exp]	0	1
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10015299 [exp]	1.0	0.6377
AT1G31500			DNAse I-like superfamily prote...		Lus10000005 [exp]	10.4	0.5887
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	11.0	0.6347
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	13.5	0.6347
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	15.6	0.6347
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	17.5	0.6347
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	19.1	0.6347
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	20.7	0.6347
					Lus10033149 [exp]	22.1	0.6347
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10019334 [exp]	23.4	0.6347

Compare expression of checked genes

Lus10029424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.