Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06300 271 / 2e-92 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT2G37210 238 / 2e-79 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT3G53450 235 / 2e-78 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT2G28305 224 / 2e-74 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT2G35990 220 / 2e-72 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT4G35190 202 / 2e-65 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT5G11950 189 / 1e-60 LOG8 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) AT5G03270 173 / 6e-54 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1) AT5G26140 152 / 1e-46 ATLOG9 LONELY GUY 9, Putative lysine decarboxylase family protein (.1) AT1G50575 45 / 3e-05 Putative lysine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004222 [exp] 302 / 2e-105 AT5G06300 293 / 1e-102 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10026513 [exp] 233 / 2e-77 AT2G37210 394 / 1e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10012436 [exp] 231 / 2e-76 AT5G06300 332 / 7e-117 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10021462 [exp] 229 / 9e-76 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10016096 [exp] 228 / 1e-75 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10024328 [exp] 226 / 1e-74 AT5G06300 328 / 2e-115 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10002226 [exp] 222 / 4e-73 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10003335 [exp] 216 / 1e-70 AT4G35190 359 / 2e-127 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10022638 [exp] 215 / 5e-70 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G072000 [exp] 267 / 5e-91 AT5G06300 323 / 1e-113 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.006G204800 [exp] 261 / 2e-88 AT5G06300 316 / 9e-111 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.016G090500 [exp] 234 / 1e-77 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.006G127400 [exp] 234 / 1e-77 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.005G237600 [exp] 231 / 1e-76 AT5G06300 338 / 2e-119 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.002G024000 [exp] 228 / 1e-75 AT2G37210 310 / 2e-108 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.009G010800 [exp] 224 / 4e-74 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.004G212200 [exp] 223 / 2e-73 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.004G181800 [exp] 212 / 3e-69 AT4G35190 361 / 3e-128 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.002G012500 [exp] 209 / 3e-68 AT4G35190 300 / 5e-104 LONELY GUY 5, Putative lysine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [flax] [poplar] SLOG PF03641 [flax] [poplar] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10029425 pacid=23139904 polypeptide=Lus10029425 locus=Lus10029425.g ID=Lus10029425.BGIv1.0 annot-version=v1.0 ATGGAAAATAGAAAGGAAGAAACGATCAAGACGACGCCGTTCCCTTTCACCATTCTGAATAATGGGGGGGTGGAGAGAAGGATTGATTTGGTGTATGGAG GTGGAAGCGTGGGATTGATGGGTCTTGTTTCTCAGGCAGTTCATGATGGTGGGCGCCATGTTCTAGGGGTCATTCCAAGGACTCTAATGCCAATCGAGGT ACATGTCCTGAACCTTCACATTCTCGGTTTTACATTACTGCACTGGTACCCCTTAAGTCTTGACGACGAGCCTAACACCGCTACGAAACTTGAGTGCAAC ATCATTAATATAACTGGGGGGTCAGTTGGAGAAGTTAGAGCTGTATCAGATATGCACCAAAGGAAAGCCGAGATGGCACGCCAAGCCGACGCTTTCATCG CCCTGCCAGGAGGCTACGGAACACTAGAGGAACTTCTCGAGGTCATTACGTGGGCTCAACTTGGCATCCATTGCAAACCCGTGGGTTTGCTGAACGTGGA TGGGTACTACAACTCATTGTTGAGTTTTATAGACAAAGCCGTTGATGAAGGCTTCATATCCCCGACAGCACGTCGCATAATTGTGTCTGCCCCGACAGCC AAGGAATTAGTCAGGCAACTTGAGGAATATGAACCTGAGTATGATGAAGTAACGGCCAAGTTGGTGTGGGAGGAGGTGGATAGAAGACCGTATGTTGCCG AATCAGGGGTCGCCACGATTTGA
AA sequence Show only first row Show all	>Lus10029425 pacid=23139904 polypeptide=Lus10029425 locus=Lus10029425.g ID=Lus10029425.BGIv1.0 annot-version=v1.0 MENRKEETIKTTPFPFTILNNGGVERRIDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPRTLMPIEVHVLNLHILGFTLLHWYPLSLDDEPNTATKLECN IINITGGSVGEVRAVSDMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHCKPVGLLNVDGYYNSLLSFIDKAVDEGFISPTARRIIVSAPTA KELVRQLEEYEPEYDEVTAKLVWEEVDRRPYVAESGVATI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10029425 [exp]	0	1
AT1G78990			HXXXD-type acyl-transferase fa...		Lus10000557 [exp]	8.1	0.8631
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10033327 [exp]	8.4	0.8706
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10034786 [exp]	11.7	0.8687
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	21.0	0.8623
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10014384 [exp]	22.5	0.8594
AT3G08680			Leucine-rich repeat protein ki...		Lus10021383 [exp]	22.8	0.8517
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10008259 [exp]	23.0	0.7880
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10026252 [exp]	24.5	0.8245
AT2G21100			Disease resistance-responsive ...		Lus10025065 [exp]	25.8	0.8550
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Lus10039436 [exp]	27.5	0.8166

Compare expression of checked genes

Lus10029425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.