Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11570 444 / 2e-155 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G06230 421 / 2e-147 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G06080 294 / 2e-96 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 289 / 2e-94 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT5G20590 246 / 3e-77 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 244 / 7e-77 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G06700 236 / 3e-72 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 234 / 3e-72 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 229 / 1e-70 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT1G48880 218 / 4e-67 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004225 [exp] 594 / 0 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10021328 [exp] 512 / 0 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10017004 [exp] 509 / 0 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10000250 [exp] 503 / 2e-180 AT3G11570 428 / 7e-150 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10034041 [exp] 284 / 2e-92 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034039 [exp] 275 / 7e-89 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10028025 [exp] 273 / 7e-88 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10041219 [exp] 272 / 8e-88 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10003734 [exp] 261 / 1e-83 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074800 [exp] 440 / 3e-154 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.008G203900 [exp] 294 / 2e-96 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.002G054400 [exp] 282 / 1e-91 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.006G208251 [exp] 259 / 3e-84 AT3G11570 280 / 1e-91 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.018G133000 [exp] 242 / 1e-75 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G071500 [exp] 240 / 6e-75 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.010G043300 [exp] 239 / 3e-74 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 236 / 2e-72 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.008G108500 [exp] 233 / 2e-72 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 232 / 3e-72 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10029430 pacid=23139854 polypeptide=Lus10029430 locus=Lus10029430.g ID=Lus10029430.BGIv1.0 annot-version=v1.0 ATGGGAGGAGAAGGGAGAGAAAGAGTAGCGGCAGAAGGGAGTTCTAATAGGCGTCTAAGACTGTTCGGTGTAAACATGGAATGGAAGCCGGAGAACGAGG ATACTGACTGCCAACCTTCTCCGTCAGTAACGACCGATTATCCAATGTCTACAAGCGATACATCCGGTGGCTCTGGCCTCCGTCAGTGCGAATTCAACGC GACGGACTTTCTGGAGAGGGCGAGGAACGGCAGAGTAGTGTTCGCCGGAGACTCGATTGGCCGGAACCAGTGGGAGTCATTCCTCTGCATGCTAGCGCAG GGAGTCTCCAATGTCTCCACAATCTACGAAGTGAACGGAAACCCAATCTCCAAGCACAGAGGGTTCCTCATCATGCGTTTCAGCGAGTACAACCTCACAG TCGAGTACTATCGAGTTCCCTTTCTGGTAATCATCGGCCGACCGCCTCAAAATTCACCCCCTGAAGTCAAGACAGCGATCAAGGTCGACCAGCTGCACTG GTTCTCTCGACGTTGGGTCGGAGCAAATGTGCTCGTGTTCAATGCTGGACATTGGTGGAATGAGTACAAAACTATCTACATGTACGGTACCGTGTCCAAC AAGGGTCACTATTTCGAAGAAGGAGGCGAGGTTAACAAGTCGATGGGTGTTATCGAAGCATTCGAGAAATCGCTGCGAACCTGGAAGAAATGGGTGACTG AGAATCTGGATAGTGAGAAGAGTCACGTTTTCTTCCGCAGCTATTCTCCTGCACATTACAGGAACGGTACTTGGAACGACGGAGGGCACTGCGATTTGGA CTTGCGACCAGAGACGGATCCGAAACTTCTGGAACCTGAGCCGGTGAACAATCGACCGATTTCCAATGTGGTTGCCCAGATGAGCAAGAAAGTCCAGTAC TTGAACATCACACATCTGACGGAGTATAGATCAGATGGTCACCCGTCGCGCTACCGTGAGCCGGGAACTCCACCGGATGCTCCACAGGATTGCAGCCACT GGTGCCTTCCGGGAATCCCGGATGTGTGGAATGAAGTGATGTATGCTCAGTTGCTGTCAATGGGATTCAAAACCAAGTGA
AA sequence Show only first row Show all	>Lus10029430 pacid=23139854 polypeptide=Lus10029430 locus=Lus10029430.g ID=Lus10029430.BGIv1.0 annot-version=v1.0 MGGEGRERVAAEGSSNRRLRLFGVNMEWKPENEDTDCQPSPSVTTDYPMSTSDTSGGSGLRQCEFNATDFLERARNGRVVFAGDSIGRNQWESFLCMLAQ GVSNVSTIYEVNGNPISKHRGFLIMRFSEYNLTVEYYRVPFLVIIGRPPQNSPPEVKTAIKVDQLHWFSRRWVGANVLVFNAGHWWNEYKTIYMYGTVSN KGHYFEEGGEVNKSMGVIEAFEKSLRTWKKWVTENLDSEKSHVFFRSYSPAHYRNGTWNDGGHCDLDLRPETDPKLLEPEPVNNRPISNVVAQMSKKVQY LNITHLTEYRSDGHPSRYREPGTPPDAPQDCSHWCLPGIPDVWNEVMYAQLLSMGFKTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10029430 [exp]	0	1
					Lus10000100 [exp]	8.7	0.9250
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10004705 [exp]	11.1	0.9153
AT5G37990			S-adenosyl-L-methionine-depend...		Lus10028500 [exp]	11.2	0.8913
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	14.7	0.9244
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	16.1	0.9197
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10000469 [exp]	17.2	0.8889
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	20.4	0.8924
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10034528 [exp]	23.7	0.8353
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	26.5	0.9125
AT5G65880			unknown protein		Lus10011719 [exp]	28.1	0.8560

Compare expression of checked genes

Lus10029430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.