Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15330 348 / 2e-119 AtPV42a Cystathionine beta-synthase (CBS) protein (.1) AT1G80090 322 / 2e-108 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1) AT1G65320 43 / 0.0002 Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004227 [exp] 603 / 0 AT1G15330 418 / 5e-146 Cystathionine beta-synthase (CBS) protein (.1) Lus10037342 [exp] 152 / 2e-45 AT1G15330 81 / 7e-19 Cystathionine beta-synthase (CBS) protein (.1) Lus10011457 [exp] 43 / 0.0004 AT1G65320 485 / 2e-171 Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10029432 pacid=23139843 polypeptide=Lus10029432 locus=Lus10029432.g ID=Lus10029432.BGIv1.0 annot-version=v1.0 ATGAACACTCTGGTCGCGAACCGGGTCGTGGCGGTGCCCGTGGCGGCGCCGCCGGGTCAGTGGATCGGGGCGGGCGGGTCGATGATTATGGAGTCCGACA AGCAGACCGGAGTGGCGAGGAAGCATTATATTGGAATGGTTACTATGCTGGATATCTTGGCGCATATTGCGGATGGTGATCAGGATGATCAGATGAATGG CGGCGGCGGGAGGGGTGGGTCGGCGTGTTTCTCCGATGAACAGCTGGTTGCGAAGATGGCGGCTCCGGTTTCTCAGATTATTGGGCATTGTCTTGAAGGT CTCAGTCTTTGGACTCTTAACCCAGGAACCAGCATCATAGATTGTATGGAAGTGCTGAGCAAGGGGATTCACCGGGCACTGGTGCCGGTGGAGAGCCACA TGGCAAACGTGGCCGGAGTGGAGCTGGTGGAGTCAGCTTCGAGCTACCGGATGTTGACCCAGATGGACTTGCTCAAGTTCTTCATCCAGGAGACGGAGAA CCACCCGGACCATCACCAGGAGCTTCGGAGCATCATGGTTCGCCCTTTGCGAGACCTTGGAGCCGTGAACGAGTGTGTTTACGCCATAACCGGACGAACC AGAGTCATTGATGCCATCAAGTGCATGAAGGCAGCTCTGTTGAATGCTGTTCCCATTGTCGTTGCTTCTGACTCTAGCGAGGATAATTCGAGGCAGCTTA TCAATGGGAAAGGGAGGAAGCTGATAGGGACATTCTCGGCGACCGATCTACGAGGGTGGCACTTCGCCACTCTACAAACATGGCTGCCTTTGACCGCCCT GGAGTTCACCGAGACCGTGTCTACATCGGCCATATACCCGGCTCCGAACTCGCCCAACATGGAGTTGAGGGAGCTCGTGACCGCCACTGCGGATTCTACC CTGCAGGAAGTCATCCAGAAGGTGGTGACCAAGCACGTCCACCGGGTGTGGGTGGTGGACTCTCAGGGTCTCCTAACGGGGCTCGTCTCGTTGACCGACA TCATCAAGGCGTTGAGGGGATCGTTGCTCTTTGTGAATGAATGA
AA sequence Show only first row Show all	>Lus10029432 pacid=23139843 polypeptide=Lus10029432 locus=Lus10029432.g ID=Lus10029432.BGIv1.0 annot-version=v1.0 MNTLVANRVVAVPVAAPPGQWIGAGGSMIMESDKQTGVARKHYIGMVTMLDILAHIADGDQDDQMNGGGGRGGSACFSDEQLVAKMAAPVSQIIGHCLEG LSLWTLNPGTSIIDCMEVLSKGIHRALVPVESHMANVAGVELVESASSYRMLTQMDLLKFFIQETENHPDHHQELRSIMVRPLRDLGAVNECVYAITGRT RVIDAIKCMKAALLNAVPIVVASDSSEDNSRQLINGKGRKLIGTFSATDLRGWHFATLQTWLPLTALEFTETVSTSAIYPAPNSPNMELRELVTATADST LQEVIQKVVTKHVHRVWVVDSQGLLTGLVSLTDIIKALRGSLLFVNE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15330		AtPV42a	Cystathionine beta-synthase (C...		Lus10029432 [exp]	0	1
AT5G18560	AP2_ERF	PUCHI	Integrase-type DNA-binding sup...		Lus10026053 [exp]	7.5	0.8131
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10013230 [exp]	13.9	0.8507
AT2G13820		AtXYP2	xylogen protein 2, Bifunctiona...		Lus10031115 [exp]	15.8	0.8695
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10021934 [exp]	19.6	0.8283
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	23.7	0.8345
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10020663 [exp]	23.7	0.8516
AT3G48710			DEK domain-containing chromati...		Lus10025759 [exp]	24.0	0.8499
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10041538 [exp]	29.6	0.8516
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10002168 [exp]	44.4	0.8222
AT5G43120			ARM-repeat/Tetratricopeptide r...		Lus10024789 [exp]	48.8	0.8413

Compare expression of checked genes

Lus10029432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.