Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18150 78 / 1e-15 RNI-like superfamily protein (.1) AT5G02700 63 / 1e-10 F-box/RNI-like superfamily protein (.1) AT3G28410 62 / 3e-10 F-box/RNI-like superfamily protein (.1) AT5G60610 61 / 3e-10 F-box/RNI-like superfamily protein (.1) AT5G02920 58 / 1e-09 F-box/RNI-like superfamily protein (.1) AT3G03360 59 / 3e-09 F-box/RNI-like superfamily protein (.1) AT5G56420 56 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G02930 56 / 2e-08 F-box/RNI-like superfamily protein (.1) AT1G16930 54 / 7e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G10400 54 / 8e-08 F-box/RNI-like/FBD-like domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035564 [exp] 274 / 3e-90 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10006513 [exp] 257 / 7e-83 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10014161 [exp] 243 / 4e-77 AT5G53840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10038967 [exp] 211 / 7e-63 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10027244 [exp] 204 / 6e-62 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10038935 [exp] 196 / 1e-59 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) Lus10020292 [exp] 194 / 4e-58 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10032255 [exp] 181 / 9e-54 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10027258 [exp] 167 / 7e-49 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 108 / 1e-26 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 84 / 5e-18 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104100 [exp] 81 / 1e-16 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 81 / 1e-16 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.001G337200 [exp] 79 / 5e-16 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104200 [exp] 78 / 7e-16 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 62 / 2e-10 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.015G002001 [exp] 58 / 3e-09 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G024300 [exp] 52 / 3e-07 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024600 [exp] 50 / 2e-06 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10029433 pacid=23139943 polypeptide=Lus10029433 locus=Lus10029433.g ID=Lus10029433.BGIv1.0 annot-version=v1.0 ATGATGATGATGATTCAGGACAGAAGAATTGATAGACTGAGTGCTCTTCCTGATGATATTTTGCACCACATTCTCTCCTTCCTAGACACTAAATTTTCTG TTGAAACTTGCATTTTGTCTAAGAGGTGGACATCTGTATGGAAATATGTTCACGTTCTCACTTTCAATGGGTACTCCTTTTGCTCTGATCGAAGTTTCGA GCAGCACACGGACCGAGTTCTATCCCTCCGTTCCGACAGTAGTAGTATTAACAGGATTGAAGCCAGCCTTGTGATGGACTCCCCAGAGGGGTTGAGGATG TCGGATAGGATCGGGAAATACGCCGCTTCCCATGGAGTTAGAGAGCTATTCATTGAGCCTCACTGTTTCAGCTTTCTGGATGCCTTCGGATTGGTACAAC TCTGTTTCCCGTCTCTGAAAGTTCTGGAGGTGTTCCTAACAAATTTTGAGGATGCTTATCATGAATTACAGTCTTGTTTGCAAGGGCTTGATTCTCTTAC TCTCACTGGATGCGTCATTAATAAGGGCCATTTTGCTAATTTATTCGGATTGAAAAGCCTAAAGCTGGACGATTGTGTATGTGGTTATGAAGGGGATCCT TTTCTCAAAGTAACTACTGCATCCAAACTGCTGAACTTGGAGATTACTTTCTGGGGCGGAATCAACAATATTGAAATAGTAGCTCCCCAGCTCCAATGTT TCACTCTTAATTTTGATATTTTATGTAGTATGAAACAAGTGTCCAAGTCGAATCTTCCTTCCCTTGATCGTGCAAACATACAGTTGGTTGGTTACAAGCG CGGCAGTACTTGCTGTAATACTACTTGTTGTTGTAAAAATGATGCCCATAAGCAACAGGCGGCGCTCGAGCACTGTGTGAACTTGTTCAAGATTCTGCAT AATGTACAAGTTCTCAATTTAGAAGTTGAAACCTTTGAGTTGCTGATCCAGATTTGCAAATCGAGCAAATATCAATCTTGTTCTCCTTTTAGAAGAATGA AGTCCATGAATGTGAAGTGTCCAGAAAAATCTCTCAAGCGTGTACCTAATCGAGTGGTTCGTTACTTTCTTGGAGGCTTCCATAAAGAAGAAGGAAAGAC TTTCACGGTCAACAAATAG
AA sequence Show only first row Show all	>Lus10029433 pacid=23139943 polypeptide=Lus10029433 locus=Lus10029433.g ID=Lus10029433.BGIv1.0 annot-version=v1.0 MMMMIQDRRIDRLSALPDDILHHILSFLDTKFSVETCILSKRWTSVWKYVHVLTFNGYSFCSDRSFEQHTDRVLSLRSDSSSINRIEASLVMDSPEGLRM SDRIGKYAASHGVRELFIEPHCFSFLDAFGLVQLCFPSLKVLEVFLTNFEDAYHELQSCLQGLDSLTLTGCVINKGHFANLFGLKSLKLDDCVCGYEGDP FLKVTTASKLLNLEITFWGGINNIEIVAPQLQCFTLNFDILCSMKQVSKSNLPSLDRANIQLVGYKRGSTCCNTTCCCKNDAHKQQAALEHCVNLFKILH NVQVLNLEVETFELLIQICKSSKYQSCSPFRRMKSMNVKCPEKSLKRVPNRVVRYFLGGFHKEEGKTFTVNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18150			RNI-like superfamily protein (...		Lus10029433 [exp]	0	1
AT5G65980			Auxin efflux carrier family pr...		Lus10001303 [exp]	56.5	0.7244
					Lus10003489 [exp]	62.7	0.6450
AT1G12650			unknown protein		Lus10024493 [exp]	75.9	0.7075
AT3G26590			MATE efflux family protein (.1...		Lus10006206 [exp]	87.8	0.6988
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10004416 [exp]	94.2	0.6705
AT5G10110			unknown protein		Lus10022498 [exp]	98.7	0.7070
AT3G44590			60S acidic ribosomal protein f...		Lus10026712 [exp]	111.4	0.6980
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10012266 [exp]	112.5	0.6933
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10041020 [exp]	165.8	0.6755
					Lus10025489 [exp]	182.8	0.6508

Compare expression of checked genes

Lus10029433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.