Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02875 62 / 2e-12 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT1G44350 54 / 7e-10 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1) AT1G51760 43 / 1e-05 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT5G54140 40 / 0.0001 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1) AT5G56660 39 / 0.0003 ILL2 IAA-leucine resistant (ILR)-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022761 [exp] 131 / 9e-38 AT3G02875 489 / 3e-172 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10016998 [exp] 75 / 7e-17 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10021321 [exp] 72 / 4e-16 AT3G02875 573 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10025668 [exp] 61 / 3e-12 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10018169 [exp] 60 / 1e-11 AT1G44350 423 / 3e-147 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10010715 [exp] 48 / 2e-07 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 47 / 2e-07 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10015388 [exp] 47 / 2e-07 AT5G54140 461 / 7e-161 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10030828 [exp] 44 / 3e-06 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074100 [exp] 93 / 2e-23 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207400 [exp] 78 / 3e-18 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207300 [exp] 78 / 3e-18 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.002G082400 [exp] 62 / 1e-12 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.005G178900 [exp] 61 / 3e-12 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.010G035900 [exp] 51 / 1e-08 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.015G004000 [exp] 44 / 3e-06 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.012G007400 [exp] 40 / 8e-05 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.003G045200 [exp] 40 / 8e-05 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029434 pacid=23139901 polypeptide=Lus10029434 locus=Lus10029434.g ID=Lus10029434.BGIv1.0 annot-version=v1.0 ATGAGGCCTTATCCAGCCACCGTGAACGACGAAGCAATGTTCGAACACGCCAAGTCCGTCGGAGGATCCCTGCTCGGAGATGGAGAATCGTCGAACGTGA AGCTCCTTCCTGTTTCAATGGGGGCAGAGGACTTCAGCTTCTACTCGCAGAAGATGAAGGCCGCAATTTTCATGATCGGTGCCGGTGGTAGTCAACCAGA GTGGCGGCGGAGCCTCTGCATTCGCCTCCATTGGTCCTCGATGAGGATGTTCTTTCCCCCGGCGCTGCTCTCCATGCTGCTGTCGCCATTTCTTACTTGG ATTAGTAGCTAA
AA sequence Show only first row Show all	>Lus10029434 pacid=23139901 polypeptide=Lus10029434 locus=Lus10029434.g ID=Lus10029434.BGIv1.0 annot-version=v1.0 MRPYPATVNDEAMFEHAKSVGGSLLGDGESSNVKLLPVSMGAEDFSFYSQKMKAAIFMIGAGGSQPEWRRSLCIRLHWSSMRMFFPPALLSMLLSPFLTW ISS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10029434 [exp]	0	1
AT5G53110			RING/U-box superfamily protein...		Lus10003400 [exp]	8.2	0.6562
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10039935 [exp]	12.9	0.7250
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	13.2	0.7432
					Lus10025936 [exp]	18.6	0.6994
AT3G51250			Senescence/dehydration-associa...		Lus10028439 [exp]	21.4	0.6995
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10024005 [exp]	23.4	0.7154
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023143 [exp]	32.2	0.6700
AT1G01540			Protein kinase superfamily pro...		Lus10036386 [exp]	39.2	0.6948
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10007479 [exp]	39.7	0.6878
AT3G60480			unknown protein		Lus10034728 [exp]	44.9	0.6548

Compare expression of checked genes

Lus10029434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.