Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08820 828 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 577 / 0 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 563 / 0 MEF22 mitochondrial editing factor 22 (.1) AT2G29760 560 / 0 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 513 / 8e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 511 / 1e-172 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 511 / 1e-171 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 503 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 508 / 1e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 506 / 6e-169 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033026 [exp] 591 / 0 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 583 / 0 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 575 / 0 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 565 / 0 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 535 / 2e-180 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10000706 [exp] 531 / 2e-179 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10020743 [exp] 519 / 3e-176 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029793 [exp] 514 / 1e-174 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 511 / 3e-171 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105700 [exp] 1048 / 0 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 1018 / 0 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 619 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 604 / 0 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 586 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 577 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G220300 [exp] 565 / 0 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 557 / 0 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.013G044700 [exp] 546 / 0 AT3G22690 582 / 0.0 unknown protein Potri.001G322100 [exp] 529 / 2e-180 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029436 pacid=23139879 polypeptide=Lus10029436 locus=Lus10029436.g ID=Lus10029436.BGIv1.0 annot-version=v1.0 ATGAGCATCTTCACGAACCCATCGTCTTCACTCTTCACAAAAGCACTCCAAATCAAGAACAGATTCCTCCAACCTTTCGATTCCCTCAACCATCTCAAGC ATGTCCACTCACAGCTCTTCCAATTCGGCCTCAACCAAGACAGCTACCTCCTCAACATGCTACTCCGCTCAACCTTTGATTTCAAAGACGCACATTACGC CCGCCAGGTGTTCGACCAAATTCACCACCCAAACGTTTTCCTCTGGAACACCATGATCCGCGGGTTAGTCTCCAACGACTGCTTCACAGACGCAATCTCA TTCTACGCTTCGATGAGAAGAGAAGGATTCTCCCCTACAGGATTCACTTTCCCTTTCGTTGTAAAAGCATGCGCCAGGAGCTTGGATTTGGGTTTCGGAT TGGAGCTTCATTCCCAGGTGGTGAAATTCGGATTCGGATCCGACGTGTTCGTGAACACCAGTTTGGTGAGCTTGTACGCGAAATGTGGGTTTATTGATGA TGCCTTCAAGGTGTTCGACGATATTCCTGATAAAAATGTTGTGTCTTGGACGGCTATAATAAGTGGATTTATCGGTGTGGGTAAGTTTAGAGAAGCGATT GATATGTTTCGGAGGTTGTTGGAGATGAATGTTTTGCCTGATAGTTTCAGCTTGGTTCGGGTTTTGTCTGCTTGCTCTCAAGTTGGAGACTTGAAAACCG GTGAGTGGATCGATAGGTACATTGTCAAGATCGGTATGGCGAGGAATGTATTCGTGACAACGTCGTTGGTGGATTTATACGCCAAGTGCGGGAACATGGA GAGAGCAAGATCGCTGTTCGAGGGAATAGGAGAGAAGGATATAGTTTCGTGGAGTACTATGATTCAGGGCTATGCTTCGAACGGGTTGCCTAAAGAAGCT CTCGAGTTTTTCCGCAAAATGTTGGATCAGGGCTTGAGACCGGATCACTATGCTATGGTTGGTGCTTTAAGCGCTTGCGCGAGGCTAGGAGCGTTAGAAT TAGGCGAATGGGCTAGCGGTTTGATGGATAGGCACGATTTCTTGGCGAATCCGGTTCTGGGGACCGCTCTGATTGATATGTATGCGAAATGTGGGAGTAT GTCTAGAGGATTTGATGTGTTTAGAGGAATCAGAGGGAAAGATAGAGTAGTTTGGAATGCTGCGATTTCGGGGCTTGCCTCGAACGGGCATTTTAGTGCG GTGTTCGGAGTTTTCGGACAGATGCAGAAGTGTGGGGTTAGACCGGACGGGAATACTTTCGTCGGACTGCTCTGCGGGTGCACTCACGCCGGTCTAGTCA AAGAAGGTCGTAAATTTTTCGACAGTATGGGTAGAGACTTCTCATTGGAACCAACGATCGAGCATTACGGGTGCATGGTAGATCTTCTGAGCCGGGCAGG GTTACTAGACGAAGCAAATTGGCTCGTCGAAAGCATGCCGATGGAGGCGAATGTTGTCGTTTGGGGATCGTTACTCGGCGGATGCAGGCTGCATCGAGAT ACCGAATTGGCGGAACACGTCCTGAAAAGGCTCATAGTATTGGAACCATCGAATGCGGGCAACTACATTCTCTTGTCAAACATTTATTCTGCGGCTAGTA AATGGGAGGATGCTGCGAGCATCAGGTCGGTCATGATCGAAAAGGGTATCAGAAAGTTGCGAGGATGTAGTTGGATTGAAGTGAACGGGGTAGTTCACGA GTTTCTCGTCGGAGACACGTCCCACCCTTTATCGGAGACCATCTATTCCAAGATCTCTGAATTGGCCAAGGATTTGCCGGCGGCGGGGTATGTTCCTACC ACGGAGTATATACTGTTTGATATAGAAGAGGAAGAGAAGGAGCATTTCCTTGGGTGCCATAGCGAGAAGCTCGCGGTTGCTTTCGGGCTGATAGCCACGG GTCCCACGGATGTGATCCGGGTGGTGAAGAACCTCAGGATATGTGGCGATTGCCACGAGGCTATCAAGGTCATTTCTCGAGTTACGGGTCGCGAGATAGT CGTTAGAGATACTAATCGCTTTCATTGTTTCTCTGGTGGAACGTGTTCTTGTAACGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10029436 pacid=23139879 polypeptide=Lus10029436 locus=Lus10029436.g ID=Lus10029436.BGIv1.0 annot-version=v1.0 MSIFTNPSSSLFTKALQIKNRFLQPFDSLNHLKHVHSQLFQFGLNQDSYLLNMLLRSTFDFKDAHYARQVFDQIHHPNVFLWNTMIRGLVSNDCFTDAIS FYASMRREGFSPTGFTFPFVVKACARSLDLGFGLELHSQVVKFGFGSDVFVNTSLVSLYAKCGFIDDAFKVFDDIPDKNVVSWTAIISGFIGVGKFREAI DMFRRLLEMNVLPDSFSLVRVLSACSQVGDLKTGEWIDRYIVKIGMARNVFVTTSLVDLYAKCGNMERARSLFEGIGEKDIVSWSTMIQGYASNGLPKEA LEFFRKMLDQGLRPDHYAMVGALSACARLGALELGEWASGLMDRHDFLANPVLGTALIDMYAKCGSMSRGFDVFRGIRGKDRVVWNAAISGLASNGHFSA VFGVFGQMQKCGVRPDGNTFVGLLCGCTHAGLVKEGRKFFDSMGRDFSLEPTIEHYGCMVDLLSRAGLLDEANWLVESMPMEANVVVWGSLLGGCRLHRD TELAEHVLKRLIVLEPSNAGNYILLSNIYSAASKWEDAASIRSVMIEKGIRKLRGCSWIEVNGVVHEFLVGDTSHPLSETIYSKISELAKDLPAAGYVPT TEYILFDIEEEEKEHFLGCHSEKLAVAFGLIATGPTDVIRVVKNLRICGDCHEAIKVISRVTGREIVVRDTNRFHCFSGGTCSCNDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10029436 [exp]	0	1
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10024956 [exp]	3.0	0.8866
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	3.2	0.8845
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	4.6	0.8972
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	5.8	0.8873
AT3G15000			cobalt ion binding (.1)		Lus10032618 [exp]	7.7	0.8857
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10022629 [exp]	9.2	0.8473
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	12.0	0.8479
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10015912 [exp]	13.1	0.7883
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	14.8	0.8338
AT3G58610			ketol-acid reductoisomerase (....		Lus10011918 [exp]	15.0	0.8408

Compare expression of checked genes

Lus10029436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.