Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38440 397 / 1e-114 ITB1, DIS3, SCAR2, WAVE4, ATSCAR2 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) AT5G01730 330 / 3e-93 ATSCAR4, WAVE3 SCAR family protein 4 (.1) AT2G34150 210 / 7e-56 ATSCAR1, WAVE1, ATRANGAP2 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2) AT1G29170 211 / 2e-55 ATSCAR3, WAVE2 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) AT4G18600 183 / 6e-46 SCARL, ATSCAR-LIKE, WAVE5 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 5, SCAR family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022757 [exp] 2376 / 0 AT2G38440 431 / 1e-127 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) Lus10013904 [exp] 227 / 6e-60 AT2G34150 300 / 6e-87 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2) Lus10001897 [exp] 227 / 9e-60 AT1G29170 305 / 1e-88 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105800 [exp] 748 / 0 AT2G38440 427 / 2e-126 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) Potri.016G129000 [exp] 540 / 4e-162 AT2G38440 444 / 2e-130 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) Potri.004G057100 [exp] 229 / 8e-61 AT1G29170 447 / 3e-139 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Potri.011G066100 [exp] 203 / 1e-52 AT1G29170 485 / 7e-154 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029437 pacid=23139792 polypeptide=Lus10029437 locus=Lus10029437.g ID=Lus10029437.BGIv1.0 annot-version=v1.0 ATGCCGTTGACGAGGTACCAGATAAGGAACGAGTACGGCTTGGCCGATCCGGAGCTGTACAGAGCTGCCGATAGAGATGATCCCGAAGCTCTCTTGGAAG GCGTCGCCATGGCTGGCCTCGTTGGTGTGCTGCGGCAGCTCGGCGACCTTGCTGAGTTTGCTGCTGAGATTTTTCATAACTTGCACGAAGAAGTAATAAC AACTGCAGCAAGAGGTCACAGTCTAATGGCGCGTGTACAGCAGCTCGAGGCTGAAGTTCCTTCAGTTGAGAAGGCGTTTCTATCTCAAACTGACCATTCG TCGTTCTTTACAAATGGAGTGGGTGTTGATTGGCGTCCTAATTTGCACATGGAACAGAATCTGATCACTCGCGGAGACTTACCCCGGTTTGTAATGGATT CTTATGAAGAATGTCGGGGTCCTCCAAGGCTGTTTCTATTGGACAAGTTTGATGTTGCAGGAGCAGGTGCTTGTTTGAAGCGATACACTGATCCCTCAAT CTTTAAAATCGAAGCTCCTACTTCTACGACAATGGAAGCACAGAGAGAGAAGAAAGCTCGAAAAATCAAGAAGAAAGGAACTCGATGGAGGAATGGAGAA ACTCCAGATGCAACTCCAGCATCTCATGCAAAATTACATCAGCTATTTCTTGAAGAGCGTGTTGCAAATGGCCATTCTGATCCGGCACGTTTAGTAAAAT TGAAAAGAAGGCAGTTAAACGGATCTTCATTTAATATGAAATCTGGGAAAAGCTACATGGAGAAATTCCTGAAGACTCCTTCACCAGACAATAAAGCAGT GTGCGAGGCTTCTGTGAATCCACCACTCTTGGCTTTAACACAAGATAGCTATAGTGAGTCGGGGCTTGAGATTGTTAAGATCGCTTCTGTAAGTCCCACT AAGCAGTTGTCACAAGATGAGGGAAGCAATAGTTTCTCACCTGAGGTCGAAGACACTGGATCAGAACACTTGCATGATGAATTGAATGGCAAGGATAGTG ATAAATGGATTGTGAAGGCCCGTTTGGAGGGCGTCGCCATGGCTGGCCTCGTTGGTGTGCTGCGGCAGCTCGGCGACCTTGCTGAGTTTGCTGCTGAGAT TTTTCATAACTTGCACGAAGAAGTAATAACAACTGCAGCAAGAGGTCACAGTCTAATGGCGCGTGTACAGCAGCTCGAGGCTGAAGTTCCTTCAGTTGAG AAGGCGTTTCTATCTCAAACTGACCATTCGTCGTTCTTTACAAATGGAGTGGGTGTTGATTGGCGTCCTAATTTGCACATGGAACAGAATCTGATCACTC GCGGAGACTTACCCCGGTTTGTAATGGATTCTTATGAAGAATGTCGGGGTCCTCCAAGGCTGTTTCTATTGGACAAGTTTGATGTTGCAGGAGCAGGTGC TTGTTTGAAGCGATACACTGATCCCTCAATCTTTAAAATCGAAGCTCCTACTTCTACGACAATGGAAGCACAGAGAGAGAAGAAAGCTCGAAAAATCAAG AAGAAAGGAACTCGATGGAGGAATGGAGAAACTCCAGATGCAACTCCAGCATCTCATGCAAAATTACATCAGCTATTTCTTGAAGAGCGTGTTGCAAATG GCCATTCTGATCCGGCACGTTTAGTAAAATTGAAAAGAAGGCAGTTAAACGGATCGTCATTTAATATGAAATCTGGGAAAAGCTACATGGAGAAATTCCT GAAGACTCCTTCACCAGACAATAAAGCAGTGTGCGAGGCTTCTGTGAATCCACCACTCTTGGCTTTAACACAAGATAGCTATAGTGAGTCGGGGCTTGAG ATTGTTAAGATCGCTTCTGTAAGTCCCACTAAGCAGTTGTCACAAGATGAGGGAAGCAATAGTTTCTCACCTGAGGTCGAAGACACTGGATCAGAACACT TGCATGATGAATTGAATGGCAAGGATAGTGATAAATGGATTGTGAAGGTGTCTGATATTGTTGCTGATTGTGAAACAGATGAATCTCCAGTTCACAACAT GTCGATTGGGAAAGAACTAGCTATTTATGCAGCTGGAAGAACTGATAGTTTAGATGAAGACCACCATTCAGATGACATGATCAGTGAGGTAGATAACTAC ATGGATGCTCTTACAACCATGGAGTCAGAAATAGAGAGCGACAATGACTATAAATCTAAACCACATGGCGCCCTAAAGTGGGTGAGTCGCCAGGCACAGT CTGATGTCAGTGAGGAACGGCCTGTAATTCAACCTAAGTTTCTTAATTCACAATCTTACAGGAATTCCTCATCTGACGATGGAAACAGTTCACTCTACAA AGGAGGATCTAGTATTTCGTACACTGATTCTCTGAGCAATGTGGCTGAGAATGTTCAATCTGATGGGGAAGTGCAATCAAAAGTTTGTCGTTCTACTGAA GACAGTGTCGTGGTAACTTCCATTTTGCAGTCAGACAATCCATCTCCTCAATTAGGGACTCAATCTCGCGAGCTTGAAGACTCAACTGATGTTTGGTCCG AGGAAGAGAAAATCCAAGAGCCTGAACGAGCTTCATCGGGTTCGCAGGCAGAATCTCTGATTTCTAATACAGGGACTAGTGTTCCAGTGGCAGACTATTC AGTAGATTCTTTAGCGGGAAAACATTCAGATGGATCAATACAAGACAAAGAAGTTTCACCTGAGTTAGGCGCACTTAATCTTGAAACAAACGAAAATCTA GAGGTTTCTTCTGTTGCTTCATCTGATTTCCATTGCCAGATAAAACCTGGTGATCCTTCTACAGTTCTTAGTGAACGTAATTCTGTTGATGATCTTGAAC AAGGAGATCCTATAGCATCGCCTAGAAGTGCACCAGGTGTGTCAGATCATGCACAAAGCAGCCATGACGATTCCATACATGATATGGATGGAACAAAGTA TTCAAATGATACTGGAAAGATTATTCTGGAGGAGAACGGTTTTCCACGGGAAGTTGAAGCGCACTCAAGTGATTTGCCATTTGAAAAGACTGGTCAGTTG GCGACTGAAGTTGATAACTTGGTTGGAGAAACAGAGGTCACTGATAGCAACGACACATTGAATAAAGACTCCATGCAATCCCTTCCCGAGTCCACTGAAG TAGGCCTTCTCAATGATGAGCAGGAAGCAGACCTTGAAGAAATGGTCTCTGTTTCAGATGCAGAGGACATTTCGAAAGACACATTCTACCAGCGTAATCT GGATGCAGCTAGTGGAAATTCCATCGTTGTCCCAGAACATTCATTTGAATATTCTGGTGAATCTGGGAGGCAGGAACCAGTCAACTTGAACGATATTGTA CCAGAGACTGTTGAAACAAAGGATGTGGTTGCATCGACCACATCTGATATTGATGGTCATGCCAATGAAAATCTTTGTCCATCTATCCATTACATTGATG TGGAAGAAAGCCTTTCAAGCTCAGACGACCAACATCAGAGAGTAGCGAACCTTCATCACAGCGTTTCATCAGAGGCTTATCCTGAAGCTGAGGCATATGA GGAAATCATTCTAAAAGGTACAGAATCGAGTCTAGGTGAATCCATCTTTTCCGAACCAGGTGCAAGTGTTGAACAACTAGACAATATGAGTGTAGTTGAT ACCGGCGCAGAACAAGCTTCAGGTTTCACTGCATCTGAACAGATTTCCCAACTTGAGGCAGGAACTCCAGAAATGTCAGCAGGGTTGCATGATGATCAAA TCAACAGAGAGTCTATTCACGTTGATGAAGGAACTTCAGAGACGGAACATATGACCATGAATTCTGCTGATCTCGATCAAGCAGCATCACATCCCTCGTT TATAGCAGAGTCCAGAACTCCTTCTGAGCAGGCCTGGGATTCGCAGCCTGATCAAACTGATGAGAGTTGTCCGGAACCAGATGAAGCAGGCTCTACCTCA TCAAATCTCGAGTTCCTGAATGAGGAAACTGTGCCTTCTGATCACGAAAGAAATCAGGATGGCCCTCCCATGACCTCTGTGATAAATCCTTCAAGCCATG AAATTTTGCTGCCATCAAACCAGGACCTTCACAGTACTGACTCGGCAGGCAATACATTTGCTTTCGCCCCTAATGGACTGGACACTCTCTCCAGTACACA ATACGTAAGTCGGGATGAAATGCCACCAATGCCGCCAATGCAATGGATTATGGGAAAGTTTCCAACTGCGTCACTTGGTAATCTTCCTATGCAACCGCGT GCAGCTGATGAGAAAGCTGAACTTGGCTTAGACAGAGAGATTGTGGAGTCTTCAAACCAGTGCTCAAGTAATAATATTGAAGATAGTCAGAAAGTTCCAG CGCTGTCTATGGATTCAACAGGAAATTCCTCCCAGCCGAATCCGTTACCGGTTGAATTTCCATCAGTTGCTAATACTGCATGCATGCAAAAGGATTCACA TCCGATTGAAGAAGCACCGGGTCCGGTTAACCCAATTTCGATGTCGGAAGATGTATCTCACAACGGTCCTGAGATCAGTGACCTTCCGTCAGCAGACTCG AAGCGATCTAGTCCAGATTCCTTGGGTGATACATCTTCATTAGCTGATGATGTGATGTTGTCTCAGGACCAAGCCAAACTAATCTCTAATGGAATAGTAT CGAAACCAGATCTAGACCCCGAACTGGCCGAACATTGTGTAGAAAGCACAGGAAGGGGACCGGTGGATGCTCCGGAGAAATCTTTACCAATAGAAAAGGA GCAACTGCAGCAAAATGTGGTTAATTCCTACGGAGGTACATCCTGGCCTCCAACGTCGTTAGCCCTGCCGCCATCTTACGAACTCGGAAAGGCAAATGGA AACAAACTTCCTCGACCCAGAAATCCTCTGATCGATGCCGTTGCTGCAAACAAAAGCAAGCTGAGGAAGGCAGCTGAACGAGTTCAGCTACAGGCCGGAC CGAAGGTGGAAGAAAGAGATACATTACTCGAACAGATCCGGACAAAGTCCTTTAATTTGAAACCCGCAGCAGCAACGCGGCCTAATATGCGTCCAAGCAT GCCCGGGATTCACGGTCCGAAAACTAACCTCAAAGTTGCTGCTATCTTGGAGAAAGCAAATGCAATCCGCCAGGCGTTGACTGGGAGCGATGAAGACGAT GATGATAACTGGAGCGACTCTTGA
AA sequence Show only first row Show all	>Lus10029437 pacid=23139792 polypeptide=Lus10029437 locus=Lus10029437.g ID=Lus10029437.BGIv1.0 annot-version=v1.0 MPLTRYQIRNEYGLADPELYRAADRDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEIFHNLHEEVITTAARGHSLMARVQQLEAEVPSVEKAFLSQTDHS SFFTNGVGVDWRPNLHMEQNLITRGDLPRFVMDSYEECRGPPRLFLLDKFDVAGAGACLKRYTDPSIFKIEAPTSTTMEAQREKKARKIKKKGTRWRNGE TPDATPASHAKLHQLFLEERVANGHSDPARLVKLKRRQLNGSSFNMKSGKSYMEKFLKTPSPDNKAVCEASVNPPLLALTQDSYSESGLEIVKIASVSPT KQLSQDEGSNSFSPEVEDTGSEHLHDELNGKDSDKWIVKARLEGVAMAGLVGVLRQLGDLAEFAAEIFHNLHEEVITTAARGHSLMARVQQLEAEVPSVE KAFLSQTDHSSFFTNGVGVDWRPNLHMEQNLITRGDLPRFVMDSYEECRGPPRLFLLDKFDVAGAGACLKRYTDPSIFKIEAPTSTTMEAQREKKARKIK KKGTRWRNGETPDATPASHAKLHQLFLEERVANGHSDPARLVKLKRRQLNGSSFNMKSGKSYMEKFLKTPSPDNKAVCEASVNPPLLALTQDSYSESGLE IVKIASVSPTKQLSQDEGSNSFSPEVEDTGSEHLHDELNGKDSDKWIVKVSDIVADCETDESPVHNMSIGKELAIYAAGRTDSLDEDHHSDDMISEVDNY MDALTTMESEIESDNDYKSKPHGALKWVSRQAQSDVSEERPVIQPKFLNSQSYRNSSSDDGNSSLYKGGSSISYTDSLSNVAENVQSDGEVQSKVCRSTE DSVVVTSILQSDNPSPQLGTQSRELEDSTDVWSEEEKIQEPERASSGSQAESLISNTGTSVPVADYSVDSLAGKHSDGSIQDKEVSPELGALNLETNENL EVSSVASSDFHCQIKPGDPSTVLSERNSVDDLEQGDPIASPRSAPGVSDHAQSSHDDSIHDMDGTKYSNDTGKIILEENGFPREVEAHSSDLPFEKTGQL ATEVDNLVGETEVTDSNDTLNKDSMQSLPESTEVGLLNDEQEADLEEMVSVSDAEDISKDTFYQRNLDAASGNSIVVPEHSFEYSGESGRQEPVNLNDIV PETVETKDVVASTTSDIDGHANENLCPSIHYIDVEESLSSSDDQHQRVANLHHSVSSEAYPEAEAYEEIILKGTESSLGESIFSEPGASVEQLDNMSVVD TGAEQASGFTASEQISQLEAGTPEMSAGLHDDQINRESIHVDEGTSETEHMTMNSADLDQAASHPSFIAESRTPSEQAWDSQPDQTDESCPEPDEAGSTS SNLEFLNEETVPSDHERNQDGPPMTSVINPSSHEILLPSNQDLHSTDSAGNTFAFAPNGLDTLSSTQYVSRDEMPPMPPMQWIMGKFPTASLGNLPMQPR AADEKAELGLDREIVESSNQCSSNNIEDSQKVPALSMDSTGNSSQPNPLPVEFPSVANTACMQKDSHPIEEAPGPVNPISMSEDVSHNGPEISDLPSADS KRSSPDSLGDTSSLADDVMLSQDQAKLISNGIVSKPDLDPELAEHCVESTGRGPVDAPEKSLPIEKEQLQQNVVNSYGGTSWPPTSLALPPSYELGKANG NKLPRPRNPLIDAVAANKSKLRKAAERVQLQAGPKVEERDTLLEQIRTKSFNLKPAAATRPNMRPSMPGIHGPKTNLKVAAILEKANAIRQALTGSDEDD DDNWSDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01730		ATSCAR4, WAVE3	SCAR family protein 4 (.1)		Lus10029437 [exp]	0	1
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	3.0	0.9440
AT3G22380		TIC	time for coffee (.1.2)		Lus10002448 [exp]	7.2	0.9380
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10008630 [exp]	7.5	0.9275
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	8.1	0.9416
AT4G13970			zinc ion binding (.1)		Lus10003970 [exp]	8.2	0.9163
AT1G10330			Tetratricopeptide repeat (TPR)...		Lus10030036 [exp]	8.7	0.9182
AT4G39420			unknown protein		Lus10006813 [exp]	9.2	0.9093
AT5G65450		UBP17	ubiquitin-specific protease 17...		Lus10015894 [exp]	10.0	0.9371
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10010729 [exp]	11.5	0.9346
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	11.5	0.9303

Compare expression of checked genes

Lus10029437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.