Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01740 124 / 5e-36 Nuclear transport factor 2 (NTF2) family protein (.1) AT3G10985 61 / 3e-12 WI12, ATWI-12, SAG20 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022755 [exp] 308 / 4e-107 AT5G01740 135 / 5e-40 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10001261 [exp] 197 / 3e-63 AT5G01740 139 / 1e-41 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10010223 [exp] 113 / 1e-28 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10017421 [exp] 107 / 2e-28 AT5G01740 115 / 2e-32 Nuclear transport factor 2 (NTF2) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G129600 [exp] 164 / 2e-51 AT5G01740 179 / 2e-58 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.016G129500 [exp] 153 / 3e-47 AT5G01740 179 / 2e-58 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.013G153801 [exp] 77 / 4e-17 AT3G10985 88 / 3e-22 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.019G125900 [exp] 71 / 3e-15 AT3G10985 93 / 9e-25 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.010G182200 [exp] 62 / 3e-12 AT3G10985 123 / 8e-38 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.008G075200 [exp] 57 / 1e-10 AT3G10985 131 / 5e-41 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF07107 [flax] [poplar] WI12 Wound-induced protein WI12
Representative CDS sequence Show only first row Show all	>Lus10029439 pacid=23139833 polypeptide=Lus10029439 locus=Lus10029439.g ID=Lus10029439.BGIv1.0 annot-version=v1.0 ATGCACTTCTCTAGACAGTTGACCGTCCCCAAAAAGTTGACCTCCTCTCTCTCAACCCTCTTCTCCAAACTAAGCTCAAGAAAAATCCTCTTCCTCTCTG GCAGCCGCAAATCTCCGATCATCGATGAATCCCCATTTACGTCCAAATCCGCAAGGTACAAATTCATTATCGGATCACTCTACAAGTCATTATTAGCGGA GCCCAAAGGTCAAACAACAAAAGATAAAATCACTGACTATGACCACCAGATCATAGCCAGTGACCTGGAGTGGTGGTTCCACGGACCACCAGGTTGCAAC TATATGATGAGAATGCTAACTGGGCAGTCAGCTAATGGGCTGACCAGCCAGCAGTTCAGGTTCGAGCCGAGGAGTATCGAGGTAGTCGGAGACTGCGTGA TTGCTGAAGGATGGGAAGGCGACAAAATTTACTGGGTCCACGTTTGGACGGTGAGAGATGATGATGATGGTGATGATAACAATAATGGTGCTATGGTGAT CACTCAGTTTAGAGAATATTTCAACACGTGGCTCACCGTGAAAGATGTCACCGGCAGCAGTAGCCGTCGCCGGATTGTCAATGCGGAGGGGGAGAAGCTT ACGATGTGGAGGAGCCAGCCGGCGGGGGGTGTTTTCGAGAAGTCTTTGCCTGGTCTTGTTCTGGCCATTTGA
AA sequence Show only first row Show all	>Lus10029439 pacid=23139833 polypeptide=Lus10029439 locus=Lus10029439.g ID=Lus10029439.BGIv1.0 annot-version=v1.0 MHFSRQLTVPKKLTSSLSTLFSKLSSRKILFLSGSRKSPIIDESPFTSKSARYKFIIGSLYKSLLAEPKGQTTKDKITDYDHQIIASDLEWWFHGPPGCN YMMRMLTGQSANGLTSQQFRFEPRSIEVVGDCVIAEGWEGDKIYWVHVWTVRDDDDGDDNNNGAMVITQFREYFNTWLTVKDVTGSSSRRRIVNAEGEKL TMWRSQPAGGVFEKSLPGLVLAI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01740			Nuclear transport factor 2 (NT...		Lus10029439 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032218 [exp]	6.5	0.8314
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10025962 [exp]	9.4	0.8458
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003453 [exp]	9.8	0.8304
AT3G04020			unknown protein		Lus10005954 [exp]	13.5	0.6679
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10012893 [exp]	16.4	0.8234
AT4G11290			Peroxidase superfamily protein...		Lus10028688 [exp]	19.6	0.7975
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10003048 [exp]	21.2	0.8149
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10000319 [exp]	21.8	0.7614
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	24.5	0.8091
AT5G35740			Carbohydrate-binding X8 domain...		Lus10012324 [exp]	32.7	0.7937

Compare expression of checked genes

Lus10029439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.