Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03010 127 / 3e-34 Phototropic-responsive NPH3 family protein (.1) AT3G62920 93 / 4e-25 unknown protein AT2G47860 87 / 3e-20 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G48800 82 / 3e-18 Phototropic-responsive NPH3 family protein (.1) AT3G08570 65 / 2e-12 Phototropic-responsive NPH3 family protein (.1) AT3G08660 61 / 5e-11 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005943 [exp] 175 / 8e-52 AT1G03010 881 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10005942 [exp] 124 / 1e-37 AT3G62920 94 / 5e-27 unknown protein Lus10038169 [exp] 83 / 9e-19 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 82 / 3e-18 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G133500 [exp] 142 / 1e-39 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 137 / 4e-38 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133600 [exp] 98 / 5e-27 AT3G62920 97 / 2e-28 unknown protein Potri.002G242300 [exp] 82 / 2e-18 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 69 / 1e-13 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029442 pacid=23149442 polypeptide=Lus10029442 locus=Lus10029442.g ID=Lus10029442.BGIv1.0 annot-version=v1.0 ATGAATGGAGGAGGAGGAGGAAATAACCAGTTATTCTTTGGTGGTCAGTTTCCGCATAGGTCAGGGAGTGGTGCGGGGAGTGGAGCCATATCTCCTAGGG ACAACTACGCGTCTGTGAGGAGGGAGAATCGAGAGCTGAAGCTCGAGGTTGCGAGGATGAGGATGAGGCTGACTGACCTTGAGAAAGACCATGTTAGTAT TAAGCAGGAGCTTGTGAGGACTCATCCTGCTAATAGGCTGTTCAAGTCGTTTGCTAGGAAACTTGGGAAGCTGAATTCTTTGTTTAGGATTAATCATGGG ATTAATGCGATGGGAGTAGGGAAGGCTAGCTCGGAGACAAGGAAGCTGGAGCAAGAGGTGGAAACGGTGGTTAAGGTACTGCAGCCTGGACCGTTGGGGA TAATAGAGCACAAATTCTCGGACGAGGAGATACGCGTGGCGAATGCTACCGTCCGAAGGGCCGTGGAGAATTGGCGGAGGAATTCGCATCTGGAGCAGAG GAATGACTTTGTTAAGGATTTTCTTCAGAAATAA
AA sequence Show only first row Show all	>Lus10029442 pacid=23149442 polypeptide=Lus10029442 locus=Lus10029442.g ID=Lus10029442.BGIv1.0 annot-version=v1.0 MNGGGGGNNQLFFGGQFPHRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSIKQELVRTHPANRLFKSFARKLGKLNSLFRINHG INAMGVGKASSETRKLEQEVETVVKVLQPGPLGIIEHKFSDEEIRVANATVRRAVENWRRNSHLEQRNDFVKDFLQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10029442 [exp]	0	1
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031142 [exp]	11.5	0.9260
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	17.9	0.9259
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10016301 [exp]	19.7	0.9204
AT3G52480			unknown protein		Lus10029407 [exp]	26.1	0.9139
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	28.0	0.9167
AT4G11950			Protein of unknown function (D...		Lus10002998 [exp]	28.4	0.9013
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	29.3	0.9175
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10039132 [exp]	29.3	0.9011
AT1G07795			unknown protein		Lus10040852 [exp]	32.5	0.9079
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028716 [exp]	33.9	0.8991

Compare expression of checked genes

Lus10029442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.