Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03010 422 / 3e-143 Phototropic-responsive NPH3 family protein (.1) AT2G47860 382 / 2e-127 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G48800 220 / 2e-65 Phototropic-responsive NPH3 family protein (.1) AT5G67385 215 / 1e-63 Phototropic-responsive NPH3 family protein (.1) AT3G08570 208 / 8e-61 Phototropic-responsive NPH3 family protein (.1) AT3G08660 179 / 3e-50 Phototropic-responsive NPH3 family protein (.1) AT2G30520 178 / 8e-50 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT1G30440 172 / 4e-47 Phototropic-responsive NPH3 family protein (.1) AT3G49970 168 / 1e-46 Phototropic-responsive NPH3 family protein (.1) AT5G03250 166 / 2e-45 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005943 [exp] 624 / 0 AT1G03010 881 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 234 / 2e-70 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038169 [exp] 225 / 3e-65 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10014858 [exp] 210 / 2e-62 AT5G67385 489 / 2e-168 Phototropic-responsive NPH3 family protein (.1) Lus10019290 [exp] 200 / 5e-59 AT5G67385 402 / 6e-135 Phototropic-responsive NPH3 family protein (.1) Lus10011532 [exp] 193 / 3e-56 AT5G67385 427 / 2e-144 Phototropic-responsive NPH3 family protein (.1) Lus10011082 [exp] 194 / 7e-56 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 179 / 1e-49 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 174 / 4e-48 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G209700 [exp] 490 / 1e-169 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 479 / 2e-165 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 242 / 8e-74 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 234 / 9e-71 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 231 / 9e-70 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 174 / 2e-48 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 174 / 3e-48 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.019G131600 [exp] 170 / 6e-47 AT2G30520 821 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.013G159000 [exp] 169 / 1e-46 AT2G30520 846 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.017G048200 [exp] 167 / 2e-45 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10029443 pacid=23149456 polypeptide=Lus10029443 locus=Lus10029443.g ID=Lus10029443.BGIv1.0 annot-version=v1.0 ATGGGAGTTGTAACAGTTGGTGAGCTGAAACCAAGCATCTCTGGCAAAAGAAGTTTCCGTCCTAGTTCCAGCATCCGACATGCCACTGAATGGCCCATTT CTGACGTCTCCAGTGATCTCTCAGTTGAGGTTGGAGGTTCAACCTTTGCACTTCACAAGTTCCCTCTGGTTTCACGAAGTGGAAGGATAAGAAAGCTATT ACTGGAATTAAAAGACTCCAACAAGATCTCGAAGATAACCATCCACGGCGTCCCCGGGGGAGCAGAAGCATTCGAAGCAGCTGCAAAGTTCTGCTACGGA ATCCACGTCGAGATCACGCTGTCAAACGTTGCGATGCTGAGGTGTGCATCCCATTTCCTGGAAATGAGCGAAGACTTCGCCGAAAAAAACATGGTAGCCA AGGCCGAATCTTTCCTCAAGGACACGGTGCTCCCAAACATATCCAACACCATCACCGTTCTTCACAGGTGCGAATCGCTCTTGCCCGTTTCGGAAGACAT CAATTTGGTGAACCGTCTCATCACTTCCATCGCCAACAATGCTTGCAAGGAGCAACTGGCATCCGGGTTGCTGAAGCTGGATCATAACTTCCCGTCCAAA TTTGTGGAGCCGGATCCGTCTTCGGATTGGTGGGGGAAGTCACTCGCAAGTTTGAGTCTTGATTTGTTCCAGAGGGTGTTGACGGCTGTGAAATCAAAGG GTTTGAAGCAGGACATGATCTGCAAGATCCTGATGAACTATGCTCGCGTTTCCTTACAGGGGCTCGCTGCTGTGAGGGATCCTCAGTTGGTTAAGGGAAC AGTGATGGATTTGGAGCTAACAAAGAGGAAGCAAAGAGTCATTGTGGAAACAATAGTTGGGTTACTACCAACTCAGTCAAGAAAAAGTCCAGTCCCAATT GCATTCCTTGCCAGCTTGCTCAAAGCTTCCATTTCAGCATCAGCAACCACTTCATGTAGATCAGATTTGGAGAGAAGGATTGGTCTTCAACTGGACCAAG CCATTCTGGAAGACGTTCTGATTCCAACCAATTCCTACGGCAACAACAACAACAATAACAGCACTACAATGTATGACACTGACACCATCCTGAGGATCTT CTCATTCTTCCTCAACTTGGACGACGATGATGACGACGATGATGAAGATCGAATGTGCGACGATCAGGGACCCGGCCCGGTACAGGCTGTGCAAGACAAT AGACAGCCAGAAACTGTCTCAAGAGGCGTGCAGCCACGCTGCCCAGAACGAAAGGCTCCCTGTCCAGATGGCGGTCCAAGTTCTCTACTTTGA
AA sequence Show only first row Show all	>Lus10029443 pacid=23149456 polypeptide=Lus10029443 locus=Lus10029443.g ID=Lus10029443.BGIv1.0 annot-version=v1.0 MGVVTVGELKPSISGKRSFRPSSSIRHATEWPISDVSSDLSVEVGGSTFALHKFPLVSRSGRIRKLLLELKDSNKISKITIHGVPGGAEAFEAAAKFCYG IHVEITLSNVAMLRCASHFLEMSEDFAEKNMVAKAESFLKDTVLPNISNTITVLHRCESLLPVSEDINLVNRLITSIANNACKEQLASGLLKLDHNFPSK FVEPDPSSDWWGKSLASLSLDLFQRVLTAVKSKGLKQDMICKILMNYARVSLQGLAAVRDPQLVKGTVMDLELTKRKQRVIVETIVGLLPTQSRKSPVPI AFLASLLKASISASATTSCRSDLERRIGLQLDQAILEDVLIPTNSYGNNNNNNSTTMYDTDTILRIFSFFLNLDDDDDDDDEDRMCDDQGPGPVQAVQDN RQPETVSRGVQPRCPERKAPCPDGGPSSLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10029443 [exp]	0	1
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10005943 [exp]	1.7	0.9616
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037664 [exp]	2.8	0.9526
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10007671 [exp]	4.9	0.9219
AT1G13610			alpha/beta-Hydrolases superfam...		Lus10019205 [exp]	5.7	0.9185
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10002687 [exp]	10.2	0.9334
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10015196 [exp]	12.0	0.8938
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10008230 [exp]	14.0	0.9201
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	14.3	0.9397
AT1G71320			F-box family protein (.1)		Lus10038210 [exp]	14.3	0.9302
AT1G52190			Major facilitator superfamily ...		Lus10038614 [exp]	15.4	0.9212

Compare expression of checked genes

Lus10029443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.