Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62910 613 / 0 APG3 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) AT2G47020 230 / 3e-71 Peptide chain release factor 1 (.1.2) AT5G36170 144 / 3e-38 ATPRFB, HCF109 high chlorophyll fluorescent 109 (.1.2.3) AT1G56350 121 / 7e-30 Peptide chain release factor 2 (.1) AT1G33330 47 / 1e-05 Class I peptide chain release factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005944 [exp] 796 / 0 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10009980 [exp] 233 / 3e-72 AT2G47020 603 / 0.0 Peptide chain release factor 1 (.1.2) Lus10038039 [exp] 231 / 2e-71 AT2G47020 600 / 0.0 Peptide chain release factor 1 (.1.2) Lus10036446 [exp] 148 / 1e-39 AT5G36170 651 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10041119 [exp] 140 / 3e-37 AT5G36170 627 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Lus10010922 [exp] 120 / 2e-29 AT1G56350 646 / 0.0 Peptide chain release factor 2 (.1) Lus10031411 [exp] 119 / 3e-29 AT1G56350 660 / 0.0 Peptide chain release factor 2 (.1) Lus10008558 [exp] 50 / 2e-06 AT1G33330 267 / 2e-89 Class I peptide chain release factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G133400 [exp] 600 / 0 AT3G62910 549 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Potri.014G114000 [exp] 224 / 7e-69 AT2G47020 579 / 0.0 Peptide chain release factor 1 (.1.2) Potri.002G188200 [exp] 151 / 2e-41 AT2G47020 380 / 3e-130 Peptide chain release factor 1 (.1.2) Potri.008G075800 [exp] 146 / 5e-39 AT5G36170 671 / 0.0 high chlorophyll fluorescent 109 (.1.2.3) Potri.013G009200 [exp] 129 / 9e-33 AT1G56350 676 / 0.0 Peptide chain release factor 2 (.1) Potri.006G045200 [exp] 70 / 9e-13 AT3G57190 426 / 7e-148 peptide chain release factor 3, peptide chain release factor, putative (.1) Potri.010G181600 [exp] 55 / 8e-10 AT5G36170 88 / 2e-22 high chlorophyll fluorescent 109 (.1.2.3) Potri.019G063800 [exp] 52 / 3e-07 AT1G33330 211 / 3e-68 Class I peptide chain release factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03462 [flax] [poplar] PCRF PCRF domain CL0337 [flax] [poplar] RF PF00472 [flax] [poplar] RF-1 RF-1 domain
Representative CDS sequence Show only first row Show all	>Lus10029444 pacid=23149469 polypeptide=Lus10029444 locus=Lus10029444.g ID=Lus10029444.BGIv1.0 annot-version=v1.0 ATGGCCACTCTGACAACGAACTTTGCAGCTCGATCATTTCACAATCACCGCAAATCCGATACACCAAGGCGCCCTTGCGACTGTGTGCTCTTCAGACACC TCTCTCCGGCGCGCATCACCCCGAGAATCGTTTGCATGGCTGAACCGCACTTGATTGCAAAGCTTGAATCCGCTGAGAAGACGTGGAAGGAATTTTCGGT CAGGCTCGCTGATCCGGATGTTGTTTCCAATCCTAATGAGTACAAAAAATTGGCCCAATCTGTCTCAGAGCTGGATGAGGTTGTCTCAACGTTCAGGAGG TTCAAGGATTGTGAGAAGCAGTTAGAAGAGACCAAAGCTCTTTCGAAGGAGGTTGGAAATGATGATGATATGGCAGAGATGATAACATCTGAAATTGACT CTTTATCACGCGAAGTGAAAGAACTTGAGGAAAAGCTTAAGTTGATGCTTCTTCCTAGCGATCCGCTTGATGCAAGGAATATAATGCTTGAAGTAAGGGC TGGCACAGGTGGTGATGAAGCTGGGATTTGGGCTGGTGATCTTGTTCGCATGTATCAAAAGTATAGCGAGCGGAACTCGTGGAAGTTTGCGGGTGTCTCA AGTTCCGAGGCTGAAAAAGGTGGATACAAAACCGTTGTGATGGAAATCAAGGGAAAACGAGTTTATAGCAAACTAAAGTATGAATCTGGTGTCCATCGCG TACAACGTGTTCCTTTAACAGAAACGCAAGGCCGAGTCCACACTTCCACTGCAACAGTAGCTATCATGCCCGAGGTAGGATGCAATTTGGGATATGGCTA CAAGTGTGGATTTGGTGTGCCTTGGCTTCATATGGTTGATGAAGTTGAGGTGGTAATTGACCCAAAAGATATTGAGCTGTCGACAGCAAGGGCTGGAGGT GCTGGAGGACAAAATGTGAACAAGGTGGAGACGGCAGTAGATCTTTTTCACAAACCGTCAGGAATCCGCATATTTTGTACTGAAGAAAGGTCGCAGTTAC AAAATAAACACCGTGCGTTCCAGCTTCTCCGTTCAAAACTGTATGAGATGAGAGTGAAGGAGCAACAAGAGAAAACAAGGAGTGAAAGAAAATTACAGGT GGGTACGGGTGCTCGTGCAGAGAAGATTCGCACATACAACTACAAAGACAATAGAGTGACTGATCACCGGTTAAAGATGAACTTTGAGCTCACTTCTTTC CTCGACGGAGCAATAGAGGACGCAGTACAGGCCTGTGCAGCAATGGAGCAGAAGGAATTGATGGAGGAGCTCGCGGATTCGGTAGCCACGCCAGCAGGCT GA
AA sequence Show only first row Show all	>Lus10029444 pacid=23149469 polypeptide=Lus10029444 locus=Lus10029444.g ID=Lus10029444.BGIv1.0 annot-version=v1.0 MATLTTNFAARSFHNHRKSDTPRRPCDCVLFRHLSPARITPRIVCMAEPHLIAKLESAEKTWKEFSVRLADPDVVSNPNEYKKLAQSVSELDEVVSTFRR FKDCEKQLEETKALSKEVGNDDDMAEMITSEIDSLSREVKELEEKLKLMLLPSDPLDARNIMLEVRAGTGGDEAGIWAGDLVRMYQKYSERNSWKFAGVS SSEAEKGGYKTVVMEIKGKRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEVGCNLGYGYKCGFGVPWLHMVDEVEVVIDPKDIELSTARAGG AGGQNVNKVETAVDLFHKPSGIRIFCTEERSQLQNKHRAFQLLRSKLYEMRVKEQQEKTRSERKLQVGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSF LDGAIEDAVQACAAMEQKELMEELADSVATPAG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	0	1
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	2.0	0.9471
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	2.8	0.9460
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	3.5	0.9373
AT1G60230			Radical SAM superfamily protei...		Lus10013005 [exp]	5.5	0.9347
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	5.7	0.9420
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10000288 [exp]	6.5	0.9309
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10001187 [exp]	7.7	0.9330
AT5G08650			Small GTP-binding protein (.1)		Lus10035968 [exp]	8.1	0.9187
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10005944 [exp]	10.6	0.9291
AT2G04360			unknown protein		Lus10012308 [exp]	10.8	0.9287

Compare expression of checked genes

Lus10029444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.