Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01037 541 / 0 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G62990 220 / 3e-65 EMB1692 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 180 / 4e-51 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 173 / 4e-48 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 167 / 1e-46 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G08940 155 / 3e-42 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 145 / 2e-38 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G79120 136 / 4e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G33495 132 / 2e-33 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 130 / 2e-33 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005945 [exp] 855 / 0 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10010567 [exp] 211 / 6e-62 AT5G62990 509 / 2e-178 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016529 [exp] 182 / 1e-51 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 155 / 8e-42 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10008711 [exp] 149 / 5e-40 AT4G08940 538 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000096 [exp] 149 / 7e-40 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10040797 [exp] 143 / 2e-37 AT5G21970 487 / 3e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10032172 [exp] 133 / 2e-34 AT1G79120 429 / 2e-150 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005755 [exp] 135 / 3e-34 AT4G33495 608 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096800 [exp] 546 / 0 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 533 / 0 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G233900 [exp] 221 / 5e-66 AT5G62990 498 / 6e-174 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 182 / 1e-51 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 163 / 5e-45 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G097900 [exp] 160 / 5e-44 AT4G08940 492 / 2e-174 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 148 / 3e-39 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G230900 [exp] 141 / 8e-37 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.001G439100 [exp] 139 / 3e-36 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.015G141700 [exp] 134 / 5e-34 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10029446 pacid=23149416 polypeptide=Lus10029446 locus=Lus10029446.g ID=Lus10029446.BGIv1.0 annot-version=v1.0 ATGGAGCTCAACATGTTACAGCTTCCTTCGACTGTCTTCCCTTCAAGCTCTTATCTCTCTCTCTTCCCTTCCTGCAAATCTCATCTCCCTCAATCCCTAA ACCCGAATTTCTCCATTCATAAATCCCAATTTTGGGGGAACAGTTTACTGCTCAAGAATGGAATCGGTTTATTCGGTCAGGTGAGGAGAAGTCGTCGGAT TGAACCAGTGAGAGCTGTAGTCAAGAGGAGAAAGGAGCGACCTTTTGATGAAGTGGTTCAGAGGGATAAGAAGCTGAAACTAGTGCTTAAGATAAGGAAA ATTTTGGTAGCTCAGCCTGATAGAACCATGCCGCTGAGGGAAATGGGTCGGTTTAGGAAAGAACTTGGTCTCAACAAAAAACGTAGATTCATTGCTCTGT TGAAGAAATTCCCAGCTGTATTCGATATCGTGGAAGAAGGTGCGTATCTGTTGCAGTTCAAGTTGACTCCCGAGGCAGAGAGGCTGTATTTTGAGGAACT CAAAGTTCTAAACGAGTTGGAGGATATACTAGTGGTTAAGCTGAGGAAGCTTTTGATGATGTCTTTAGAGAAGAGGATCTTGTTGGAAAAGATCGCACAT TTGAGGAATGATTTGGGGCTTCCATTGGAATTTCGCGACACGATTTGTAATCGATACCCGCAGTACTTTAAAGTTGTTCCGACTGAGAGAGGGCGAGCTC TGGAACTGACTCACTGGGATCCCGAGCTTGCTGTTTCGGCATGGGAGCTATCTGCTGAGGAAAAAAGAGCTAAGGAGGCTGAAGAGAAGGATTTAATTAT CGATAGACCGCCCAAGTTCAATAGGCCGAAGTTACCTAGAGGTTTGCAGCTTACTAGAGGCGAGTTGAGGAAGATAAGCCGGTTCAACGATATCCCTTAC ATATCTCCTTATGAAGATTTTACTCATTTGAGGCCTGGTACGAGGGAGAAGGAGAAGCATGCGTGTGGGGTTGTCCATGAGATGTTGAGTCTGACTGTGG AGAAGAGGACTTTGGTTGATCACCTCACACATTTTCGAGAAGAGTTTCGATTCTCGCAGCAGGTCCGAGGGATGCTTATAAGGCATCCTGATCTGTTTTA TGTGTCGTTGAAAGGCGATAGGGATTCGGTGTTCCTTAGGGAGGCGTATAGTAACTCGCATTTGATTGATAAAGATCGGATGTTGCTCATCAAGGAGAAG CTGCGGTCTTTGGTTAATGTACCGAGATTTGGTAGTAGGCGCGGTCAGATGAGAATCGAAGGAGGAGATGTCGATGGCGGAGAAGACAATGGTGATGCAC AAGGGGACATAAGTGGCAATGAGGAAGATGAAGATTGGTCTGACATCGATAGTTTCATGGATGACGGCAATGATGATGATGGTGATAATGATGATGATTG GGGCGGTGTAGATGATGAAACGCCCCCGAATTTTGATGAAGAGGATGAAGCCTTGAAGGTCAAGATTCCTGTAGGCAAAAAGACAGTTAGAGAGCCAAGC AAGTTAGCCAATGAACAAAATGGTAGGCCTTTGTCTCCCGTATTCCCTGATGGTCGACCGAGGGAACGTTGGTAG
AA sequence Show only first row Show all	>Lus10029446 pacid=23149416 polypeptide=Lus10029446 locus=Lus10029446.g ID=Lus10029446.BGIv1.0 annot-version=v1.0 MELNMLQLPSTVFPSSSYLSLFPSCKSHLPQSLNPNFSIHKSQFWGNSLLLKNGIGLFGQVRRSRRIEPVRAVVKRRKERPFDEVVQRDKKLKLVLKIRK ILVAQPDRTMPLREMGRFRKELGLNKKRRFIALLKKFPAVFDIVEEGAYLLQFKLTPEAERLYFEELKVLNELEDILVVKLRKLLMMSLEKRILLEKIAH LRNDLGLPLEFRDTICNRYPQYFKVVPTERGRALELTHWDPELAVSAWELSAEEKRAKEAEEKDLIIDRPPKFNRPKLPRGLQLTRGELRKISRFNDIPY ISPYEDFTHLRPGTREKEKHACGVVHEMLSLTVEKRTLVDHLTHFREEFRFSQQVRGMLIRHPDLFYVSLKGDRDSVFLREAYSNSHLIDKDRMLLIKEK LRSLVNVPRFGSRRGQMRIEGGDVDGGEDNGDAQGDISGNEEDEDWSDIDSFMDDGNDDDGDNDDDWGGVDDETPPNFDEEDEALKVKIPVGKKTVREPS KLANEQNGRPLSPVFPDGRPRERW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Lus10029446 [exp]	0	1
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Lus10005945 [exp]	1.0	0.9842
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10024985 [exp]	1.4	0.9343
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10000897 [exp]	5.2	0.9276
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10035678 [exp]	9.8	0.9198
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037012 [exp]	10.7	0.9137
					Lus10038585 [exp]	11.0	0.9156
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031792 [exp]	20.1	0.9115
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10038523 [exp]	24.0	0.8866
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	34.1	0.8981
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	35.0	0.8982

Compare expression of checked genes

Lus10029446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.