Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01040 560 / 0 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005946 [exp] 853 / 0 AT4G01040 571 / 0.0 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096700 [exp] 585 / 0 AT4G01040 565 / 0.0 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10029447 pacid=23149465 polypeptide=Lus10029447 locus=Lus10029447.g ID=Lus10029447.BGIv1.0 annot-version=v1.0 ATGGCGAAGAAGAGAAATGTCCGGCAAGCAGCTAACACGAGCCACAGTCGAACCAAGCGCGTAGATGAACCTACGCCGGAAAACCAATTCAGTGAAGCAT CCTCCTCCGATCGGAGACTCCTTGCCATTTTCTTCGTCTCCTTCGTAGCGATTCCCGCCATCTCTGTACTCTTGTATCGATTCAAGTTCGCTCCGGCTCT ACCGGACCTTTCGGAATCGATTGAGCAAAAGCAAGCAGCCGGTTTCAAAGTTGATTTGAATTACCACGACATCCTGGAAGAGAATTCTAAGGTATCCGAG AATCGATCTCAACGCCATTATGAGTATCATGTTTTAGGCTACATTACACCATGGAATTCCAAAGGCTATGAAATAGCGAAGAAGTTTATTGATAAGTTTA CGCACTTATCCCCTGTATGGTATGATCTCAAGAGCCAAGGTTCTGGACTGGTGCTCGAGGGTAGACATAATGCTGATAGAAGCTGGATTTTGGAGCTGAG GGAGAATGGACATGCCCTGGTGTTACCTAGAGTTGTACTGGAAGCATTTCCACAAGAGCTGCTTAAAAAGAAGAAACTAAGGAATAGAGCAATCGAACTC ATAGTAACAGAGTGCATGGAGATGGAATATGATGGAATTGTGCTCGAGTCCTGGTCAAGATGGGCGGGATATGGCGTCTTGCATGATCCTGATATGAGAA ACAAGGCACTACAGTTCGTCAAGAAACTTGGCGACAAACTTCATTCTGTGAGCTCAGTGAGGAACAATAAGCAACCATTACAGTTGGTCTACGTTATAGG TCCACCAAGTTCAGAACAGCTTCAAGCGCACGACTTCGGCCCGAACGATCTCCGCAGTCTGAGTAGTGCCGTAGATGGGTTTTCCTTGATGACTTACGAC TTCTCAAATGCTCAAAACCCAGGACCAAATGCTCCTCTGAAGTGGATAAAGCGAACCTTGCAGCTGCTACTTGACCCTGCTAATAATGCTCAAAGCCTGG CACCAAAGATATTCCTCGGTCTCAACTTCTACGGGAACGACTTCTCTCTTTCAGGAGGTGGTGGGGCTATACTTGGACGGGACTACCTATCCTTACTAGA TAAGCACAAGCCCCAATTGCAGTGGGAACCAAAGAGTGCGGAACATTTCTTCGTGTATGTGGACGATGACGGAAAGAGGCGTGCTGTGTTCTATCCGACA TTGTCGTCGATCTCTGTACGACTTGAAGAAGCAAGAACATGGGGAACTGGTATCTCAATCTGGGAAATTGGACAAGGTTTGGATTATTTCTATGATCTCT TGTAG
AA sequence Show only first row Show all	>Lus10029447 pacid=23149465 polypeptide=Lus10029447 locus=Lus10029447.g ID=Lus10029447.BGIv1.0 annot-version=v1.0 MAKKRNVRQAANTSHSRTKRVDEPTPENQFSEASSSDRRLLAIFFVSFVAIPAISVLLYRFKFAPALPDLSESIEQKQAAGFKVDLNYHDILEENSKVSE NRSQRHYEYHVLGYITPWNSKGYEIAKKFIDKFTHLSPVWYDLKSQGSGLVLEGRHNADRSWILELRENGHALVLPRVVLEAFPQELLKKKKLRNRAIEL IVTECMEMEYDGIVLESWSRWAGYGVLHDPDMRNKALQFVKKLGDKLHSVSSVRNNKQPLQLVYVIGPPSSEQLQAHDFGPNDLRSLSSAVDGFSLMTYD FSNAQNPGPNAPLKWIKRTLQLLLDPANNAQSLAPKIFLGLNFYGNDFSLSGGGGAILGRDYLSLLDKHKPQLQWEPKSAEHFFVYVDDDGKRRAVFYPT LSSISVRLEEARTWGTGISIWEIGQGLDYFYDLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01040			Glycosyl hydrolase superfamily...		Lus10029447 [exp]	0	1
AT1G73600			S-adenosyl-L-methionine-depend...		Lus10009056 [exp]	3.7	0.8613
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	9.3	0.8808
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10043062 [exp]	10.6	0.8159
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	18.7	0.8245
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10031348 [exp]	19.8	0.8419
AT2G40316			unknown protein		Lus10007527 [exp]	22.0	0.8398
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Lus10034972 [exp]	23.8	0.7724
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	26.8	0.7860
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	28.7	0.8046
AT1G67590			Remorin family protein (.1.2)		Lus10015817 [exp]	29.7	0.8112

Compare expression of checked genes

Lus10029447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.