Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01050 350 / 6e-117 TROL thylakoid rhodanese-like (.1) AT3G25480 95 / 5e-22 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G23060 43 / 0.0004 CaS calcium sensing receptor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005947 [exp] 644 / 0 AT4G01050 415 / 1e-141 thylakoid rhodanese-like (.1) Lus10005853 [exp] 87 / 6e-19 AT3G25480 219 / 1e-70 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10001215 [exp] 79 / 5e-16 AT3G25480 208 / 2e-66 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096500 [exp] 391 / 1e-133 AT4G01050 388 / 5e-132 thylakoid rhodanese-like (.1) Potri.002G169100 [exp] 372 / 4e-126 AT4G01050 400 / 1e-136 thylakoid rhodanese-like (.1) Potri.002G239800 [exp] 96 / 9e-22 AT3G25480 251 / 2e-82 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029448 pacid=23149422 polypeptide=Lus10029448 locus=Lus10029448.g ID=Lus10029448.BGIv1.0 annot-version=v1.0 ATGGATAGCCTCAATGCAGCAAGCTTGAAACCATTATCCATCCTCCCCAAAACTAGCAGAAGAAGAAGCATAAACTTTCCACCATCTCACAAAGTCTCGA GTTCGAAACCCTCGTCGCCGCCGGCGACCATCAATGGAGGGCTAATGCTACTCTCTTCACTTTTTACCACTCCCCTGGCTAAAGCCCTCACCTACGAGGA AGCTCTGGAGCTATCAGCAGGAGGAGCAGACGGCTTATCTGGGTTCGATGCAAATGAGTTTGTCGACACCATAATTGGGTTCGGAACCGACAACCCTATT GTGGTCGCCGGCGGAGTTGCCGCTGCTGCTTTAGCGGTTCCTCTGGTTCTGTCTCAGGTTCTGAAATCCCCGAAATCGTTCGGGGTTGAGTCTGCTAGAA AGGCTTACGAGGTTCTGGGTGAAGATCCTGGTGCTCAATTGCTCGATATCAGGGCTGCTTCCGAGCTCAGACAAGTGGGTGTTCCTGACGTTAAAGGTTT GGGGAAGAAGGCCGTGCTGGTTGCTTATAAGGGTGAGGACAAAGCTGGGTTTTTGAAGAGATTGGGTTTGAAGTTCAAGCAACCTGAGAGTACTACATTG TTCGTTTTGGACAAATTTGATGGGAACTCTGAATTGGTTGCTGAGCTAGTGACTGTAAATGGATTCAAAGCTGCTTATGCAATTAAAGATGGTGCTGAAG GACCTAGGGGATGGCAGAATAGTGGTCTTCCCTGGACTGCACCGAGTAAAGGACTGAATCTTGATTTCAGCAACTTGACTGAGGCTATCAGTGATCTGGT TGGAGCGGACTCGGATCCCTTGTCCGTGACTTTAGGAGTCGCAGCAGCAGCTGGGTTGGGTGCTCTGGCCTTCACAGAGGTAGAAACTCTACTTCAACTA CTAGGCTCAGCTGCACTGATCCAATTTGCGAGCAAGAAACTCCTGTTCGCGGAGGACCGGAAGGCAACTCTGAAGCAAGTCGACGAGTTCTTGACTACAA AGATTGCACCAAAGGAGCTTCTTGGTGAGATCAAGGAAATCGGGCAAGCTCTTCTACCAACAACTAGAACTGGCAAAGCTCTTCCTGCACCAACCGAATC CAGCCCTCCAGCTGCAGCTGCAGAGCCGGTTTCTGACGTCAATTCTGTGCCGAAACCAGAAGTTAAAGCGGAATCAGTTCCCGGGTTGCCAAGGCCACTC TCACCTTATACATCATATCCAGATTTGAAGCCTCCAACATCTCCAGCTCCACCACAAAAACCAGCAGCAGTTGCGGTCGGGCCTGTGGCCTGA
AA sequence Show only first row Show all	>Lus10029448 pacid=23149422 polypeptide=Lus10029448 locus=Lus10029448.g ID=Lus10029448.BGIv1.0 annot-version=v1.0 MDSLNAASLKPLSILPKTSRRRSINFPPSHKVSSSKPSSPPATINGGLMLLSSLFTTPLAKALTYEEALELSAGGADGLSGFDANEFVDTIIGFGTDNPI VVAGGVAAAALAVPLVLSQVLKSPKSFGVESARKAYEVLGEDPGAQLLDIRAASELRQVGVPDVKGLGKKAVLVAYKGEDKAGFLKRLGLKFKQPESTTL FVLDKFDGNSELVAELVTVNGFKAAYAIKDGAEGPRGWQNSGLPWTAPSKGLNLDFSNLTEAISDLVGADSDPLSVTLGVAAAAGLGALAFTEVETLLQL LGSAALIQFASKKLLFAEDRKATLKQVDEFLTTKIAPKELLGEIKEIGQALLPTTRTGKALPAPTESSPPAAAAEPVSDVNSVPKPEVKAESVPGLPRPL SPYTSYPDLKPPTSPAPPQKPAAVAVGPVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10029448 [exp]	0	1
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10005947 [exp]	1.0	0.9736
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	4.2	0.9214
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10019820 [exp]	6.0	0.9121
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10000554 [exp]	6.7	0.9161
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10018528 [exp]	8.5	0.9165
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	9.6	0.9174
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10016971 [exp]	10.2	0.9126
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	10.6	0.9142
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	11.7	0.9150
AT2G42130			Plastid-lipid associated prote...		Lus10004171 [exp]	14.0	0.8489

Compare expression of checked genes

Lus10029448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.